These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1026 fasta sequence [ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAAAACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGCGCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTATCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGTCGTCTCCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCATTCCTTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGGTCNGCTGGAAAATGTAGCAAGAGAAAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAGAAGGCAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAATAGCGAAGATC] [+] EMBL BX624977 [ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAAAACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGCGCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTATCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGTCGTCTCCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCATTCCTTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGGTCNGCT ] [+] EMBL BM612028 [ ccgGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTGGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAAACACACACAACACA TTTTTTGCATTCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGTCCGGCTGGAAAATGTAGCAAGAGAAAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAGAAGGCAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAATAGCGAAGATC] consensusID : consensus_5555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTGGTTATCGGATAAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTATGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCATTCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACAGAAAGCAGAACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAAG] [+] EMBL BM581776 [CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTGGTTATCGGATAAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTATGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCATTCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACAGAAAGCAGAACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAAG] consensusID : consensus_5555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [CCGCGGACGCGTGGGCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTT] [+] EMBL BM600970 [CCGCGGACGCGTGGGCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5555#0 ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAA 60 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 ------------------------------------------------------------ consensus_5555#0 AACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGC 120 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 ------------------------------------------------------------ consensus_5555#0 GCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTA 180 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 ------------------------------------------------------------ consensus_5555#0 TCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGT-CGTCTCCGGATTGGTCCTTGCGG 239 consensus_5555#2 ----------------------------CCGCGGACGCGTGGGCGGATTGGTCCTTGCGG 32 consensus_5555#1 ------------------------------------------------------------ consensus_5555#0 AAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATC 299 consensus_5555#2 AAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATC 92 consensus_5555#1 ------------------------------------------------------------ consensus_5555#0 CTACAACGGAGAGTTGATGCAAC-ACTCACTCA--CACATACACACACCCGGTGATCGTG 356 consensus_5555#2 CTACAACGGAGAGTTGATGCAAC-ACTCACTCA--CACATACACACACCCGGTGATCGTG 149 consensus_5555#1 ----------CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTG 50 * * ** * * *** * * *********************** consensus_5555#0 GTTATCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGA 416 consensus_5555#2 GTTATCGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGA 209 consensus_5555#1 GTTATCGGATAAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGA 110 ********** **** ************* ****************************** consensus_5555#0 CAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTG 476 consensus_5555#2 CAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTT------------------- 250 consensus_5555#1 CAACACCTTATGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTG 170 ********** ****************************** consensus_5555#0 CGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAG 536 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 CGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAG 230 consensus_5555#0 GAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACAC 596 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 GAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACAC 290 consensus_5555#0 TGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCA 656 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 TGAGCTGAAGAAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCAT 350 consensus_5555#0 TTCCTTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCT 716 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 TCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTA 410 consensus_5555#0 AATCAGTAAGACCGATGTACGGGGGGTCNGCTGGAAAATGTAGCAAGAGAAAGAGAGAGA 776 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 ATCAGTAAGACCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAG 470 consensus_5555#0 GACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGA 836 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 AGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAG 530 consensus_5555#0 CGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAG 896 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 ACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACA 590 consensus_5555#0 AAGGCAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGG 956 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 GAAAGCAGAACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGG 650 consensus_5555#0 TGTTGACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAAT 1016 consensus_5555#2 ------------------------------------------------------------ consensus_5555#1 TGTTGACAGCTTGCAAAGCAACTTGAAAAG------------------------------ 680 consensus_5555#0 AGCGAAGATC 1026 consensus_5555#2 ---------- consensus_5555#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||