cluster # 556

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Anopheles gambiae
cluster # 556 cluster # 556 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_556#0 length = 522 sequences # 1

consensus_556#1 length = 459 sequences # 1

consensusID : consensus_556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [CCGAGGAGATACCGCTGGAAGACTTTCGTCGCTCCCAAAACTCTAGTCCCGTGTCGCGCAACTCATCCAACAATCCATCCCGTTCGCACACTCCTTCCCGGTTAACGTTAGAGCCGCTGAGTGTGGTTAACATCTCGTCGAACATGGGCGGCAGTGGAAGTGGGACGACCGGTGGCAACGGGAGCGTGCTGAGCGGTTCCGTGAAAGATCCGATCATTCCGAATGTGCTGTTAGCTGGTACGATTAACCCGGTACCGAACGTAACGCCACTTCCGGTCGGCGGCCCGCTCGCCGTACCGTCGGAGTTGAGCCCAACATCGGAGGAAACATCGTTCATTGCGAACGAGGAGCGGCAGAAAAAGCGAGGAGTCATCGAAACGGTGTAAACACTGAATCGCGATAGCAGGGTACACATATTTACGATCGATGGCTCCGGACAAAGAAGATTCGTGAGGGGTGTGGTACTCTTCCTTTGTATTTATTTCTGTTGTAACGGTTAGGTTTTATTGTTGAGATTTTAAA]

[+] EMBL BM621717             [CCGAGGAGATACCGCTGGAAGACTTTCGTCGCTCCCAAAACTCTAGTCCCGTGTCGCGCAACTCATCCAACAATCCATCCCGTTCGCACACTCCTTCCCGGTTAACGTTAGAGCCGCTGAGTGTGGTTAACATCTCGTCGAACATGGGCGGCAGTGGAAGTGGGACGACCGGTGGCAACGGGAGCGTGCTGAGCGGTTCCGTGAAAGATCCGATCATTCCGAATGTGCTGTTAGCTGGTACGATTAACCCGGTACCGAACGTAACGCCACTTCCGGTCGGCGGCCCGCTCGCCGTACCGTCGGAGTTGAGCCCAACATCGGAGGAAACATCGTTCATTGCGAACGAGGAGCGGCAGAAAAAGCGAGGAGTCATCGAAACGGTGTAAACACTGAATCGCGATAGCAGGGTACACATATTTACGATCGATGGCTCCGGACAAAGAAGATTCGTGAGGGGTGTGGTACTCTTCCTTTGTATTTATTTCTGTTGTAACGGTTAGGTTTTATTGTTGAGATTTTAAA]




>consensus_556#0
CCGAGGAGATACCGCTGGAAGACTTTCGTCGCTCCCAAAACTCTAGTCCCGTGTCGCGCA
ACTCATCCAACAATCCATCCCGTTCGCACACTCCTTCCCGGTTAACGTTAGAGCCGCTGA
GTGTGGTTAACATCTCGTCGAACATGGGCGGCAGTGGAAGTGGGACGACCGGTGGCAACG
GGAGCGTGCTGAGCGGTTCCGTGAAAGATCCGATCATTCCGAATGTGCTGTTAGCTGGTA
CGATTAACCCGGTACCGAACGTAACGCCACTTCCGGTCGGCGGCCCGCTCGCCGTACCGT
CGGAGTTGAGCCCAACATCGGAGGAAACATCGTTCATTGCGAACGAGGAGCGGCAGAAAA
AGCGAGGAGTCATCGAAACGGTGTAAACACTGAATCGCGATAGCAGGGTACACATATTTA
CGATCGATGGCTCCGGACAAAGAAGATTCGTGAGGGGTGTGGTACTCTTCCTTTGTATTT
ATTTCTGTTGTAACGGTTAGGTTTTATTGTTGAGATTTTAAA

consensusID : consensus_556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [GAACTCGGGTAAGGGGGACGTCAGGAAGGCTAACATCGTCCGTCATTTTCCACCAGCAACCGGGTGCCGGGTGTGGCTGCGGCCTTGAAGGCGCGATAGTATGCCATCGGGCAGCGTCAGTCGTGTGCAGATGAGTGCGAGTCGCTCAACCGAAGGCGAACCAACGGGCACGCGAAGAAAGCTGACTGCGTGGAGCCACTCGGCGGGAAAGCAGCCAACCGATCGGCATTGGATCGAGCTCGCTGAAATCGCGGGAAAATTCGCGTAACCGGTCCGGTACGCCCCGGTCCAGGGAATCGAGCCCGCGCATACCACGGCCCCGGTTCGGAGGAGATACCGCGTGGAAGACTTTGCGTCGCTCCCAAAACTCTAGTCCCGTGTCGNCGCANCTCAGTCNCAANAAGTCNCATNCCGGTTACGGCGACGACTNCNCTTTCCACGGGGTTAAACGGTNGAGAA]

[+] EMBL BX469031             [GAACTCGGGTAAGGGGGACGTCAGGAAGGCTAACATCGTCCGTCATTTTCCACCAGCAACCGGGTGCCGGGTGTGGCTGCGGCCTTGAAGGCGCGATAGTATGCCATCGGGCAGCGTCAGTCGTGTGCAGATGAGTGCGAGTCGCTCAACCGAAGGCGAACCAACGGGCACGCGAAGAAAGCTGACTGCGTGGAGCCACTCGGCGGGAAAGCAGCCAACCGATCGGCATTGGATCGAGCTCGCTGAAATCGCGGGAAAATTCGCGTAACCGGTCCGGTACGCCCCGGTCCAGGGAATCGAGCCCGCGCATACCACGGCCCCGGTTCGGAGGAGATACCGCGTGGAAGACTTTGCGTCGCTCCCAAAACTCTAGTCCCGTGTCGNCGCANCTCAGTCNCAANAAGTCNCATNCCGGTTACGGCGACGACTNCNCTTTCCACGGGGTTAAACGGTNGAGAA]




>consensus_556#1
GAACTCGGGTAAGGGGGACGTCAGGAAGGCTAACATCGTCCGTCATTTTCCACCAGCAAC
CGGGTGCCGGGTGTGGCTGCGGCCTTGAAGGCGCGATAGTATGCCATCGGGCAGCGTCAG
TCGTGTGCAGATGAGTGCGAGTCGCTCAACCGAAGGCGAACCAACGGGCACGCGAAGAAA
GCTGACTGCGTGGAGCCACTCGGCGGGAAAGCAGCCAACCGATCGGCATTGGATCGAGCT
CGCTGAAATCGCGGGAAAATTCGCGTAACCGGTCCGGTACGCCCCGGTCCAGGGAATCGA
GCCCGCGCATACCACGGCCCCGGTTCGGAGGAGATACCGCGTGGAAGACTTTGCGTCGCT
CCCAAAACTCTAGTCCCGTGTCGNCGCANCTCAGTCNCAANAAGTCNCATNCCGGTTACG
GCGACGACTNCNCTTTCCACGGGGTTAAACGGTNGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_556#0      CCGAGGAGATACCGCTGGAAGACTTTCGTCGCTCCCAAAACTCTAGTCCCGTGTCGCGCA 60
consensus_556#1      --------------------------------------------GAACTCGGGTAAGGGG 16
                                                                    * ** **   *  

consensus_556#0      ACTCATCCAACAATCCATCCCGTTCGCACACTCCTTCCCGGTTAACGTTAGAGCCGCTGA 120
consensus_556#1      GACGTCAGGAAGGCTAACATCGTCCGT-CATTTTCCACCAGCAACCG-----GGTGCCGG 70
                              *      *   *** **  ** *     ** *  * **     *  ** * 

consensus_556#0      GTGTGGTTAACATCTCGTCGAACATGGGCGGCAGTGGAAGTGGGACGACCGGTGGCAACG 180
consensus_556#1      GTGTGGCTGCGGCCTTGAAGG-CGCGATAGTATGCCATCGGGCAGCGTCAGTCGTGTGCA 129
                     ****** *     ** *  *  *  *   *   *     * *   ** * *  *    * 

consensus_556#0      GGAGCGTGCTGAGCGGTTCCGTGAAAGATCCGATCATTCCGAATGTGCTGTTAGCTGGTA 240
consensus_556#1      GATGAGTGC-GAGTCGCTCAACCGAAGG-CGAACCAACGGGCACGCGAAGAAAGCTGACT 187
                     *  * **** ***  * **     ***  *  * **    * * * *  *  *****   

consensus_556#0      CGATTAACCCGGTACCGAACGTAACGCCACTT-CCGGTCGGCGGCCCGCTCGCCGTACCG 299
consensus_556#1      GCGTGGAGCCACT--CGGCGGGAAAGCAGCCAACCGATCGGCA-TTGGATCG--AGCTCG 242
                        *  * **  *  **   * ** **  *   *** *****     * ***      **

consensus_556#0      TCGGAGTTGAGCCCAACATCGGAGGAAACATC--GTTCATTGCGAACGAGGAGCGGCAGA 357
consensus_556#1      CTGAAATCGCGGGAAAATTCGCGTAACCGGTCCGGTACGCCCCGGTCCAGGGA--ATCGA 300
                       * * * * *   **  ***    *    **  ** *    **  * ***       **

consensus_556#0      AAAAGCGAGGAGTCATCGAAACGGTGTAAACACTGAATCGCGATAGCAGGGTACACATAT 417
consensus_556#1      GCCCGCGCATA-CCACGGCCCCGGTTCGGAGGAGATACCGCG-TGGAAGACTTTGCGTCG 358
                         ***   *  **  *   ****    *      * **** * * **  *   * *  

consensus_556#0      TTAC--GATCGATGGCTCCGGACAAAGAAGATTCGTGAGGGGTGTGGTACTCTTCCTTTG 475
consensus_556#1      CTCCCAAAACTCTAGTCCCGTGTCGNCGCANCTCAGTCNCAANAAGTCNCATNCCGGTTA 418
                      * *   * *  * *  ***            **           *   *    *  ** 

consensus_556#0      TATTTATTTCTGTTGTAACGGTTAGGTTTTATTGTTGAGATTTTAAA 522
consensus_556#1      CGGCGACGACTNCNCTTTCCACGGGGTTAAACGGTNGAGAA------ 459
                          *   **    *  *     ****  *  ** ****