cluster # 5560

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Anopheles gambiae
cluster # 5560 cluster # 5560 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5560#0 length = 798 sequences # 3

consensus_5560#1 length = 90 sequences # 1

consensusID : consensus_5560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 798
fasta sequence

                              [GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTGTTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAGCTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTGGCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATCGACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCGCGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAACCTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGGGGCTGGATATAGGGCCCG]

[+] EMBL BX610599             [GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTGTTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAGCTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTGGCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATCGACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCGCGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAACCTGGTAGAGGA                                                                   ]
[+] EMBL BX610598             [           AGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTGTTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGT                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX614962             [                                                                    GATCCCGATAGCGTTGCGCTATCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGTCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAGCTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTGGCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATCGACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCGCGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAACCTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGGGGCTGGATATAGGGCCCG]




>consensus_5560#0
GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTG
TTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATT
CATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAG
ATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGG
CGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAG
CTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAA
TATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAG
ATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAG
CTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTG
GCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATC
GACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCG
CGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAAC
CTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGG
GGCTGGATATAGGGCCCG

consensusID : consensus_5560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 90
fasta sequence

                              [GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATTCATAAGTATCTCGTCAAGAAGGAAATCGATGCGGGGGTGAGCCAGGCG]

[+] EMBL BX610600             [GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATTCATAAGTATCTCGTCAAGAAGGAAATCGATGCGGGGGTGAGCCAGGCG]




>consensus_5560#1
GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATTCATAAGTATCTCGTCAAG
AAGGAAATCGATGCGGGGGTGAGCCAGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5560#0      GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTG 60
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATT 120
consensus_5560#1      ------------------GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATT 42
                                        ********* *************** ** *************

consensus_5560#0      CATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAG 180
consensus_5560#1      CATAAGTATCTCGTCAAGAAGGAAATCGATGCGGGGGTGAGCCAGGCG------------ 90
                      *******************  ** ************ ***********            

consensus_5560#0      ATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGG 240
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAG 300
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAA 360
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAG 420
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      ATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAG 480
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTG 540
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATC 600
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCG 660
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAAC 720
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGG 780
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GGCTGGATATAGGGCCCG 798
consensus_5560#1      ------------------