cluster # 5561

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5561 cluster # 5561 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5561#0 length = 919 sequences # 3

consensus_5561#1 length = 654 sequences # 1

consensusID : consensus_5561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 919
fasta sequence

                              [CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGC]

[+] EMBL BM604460             [CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCACGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGA                                                                                                                                                                                                                                                   ]
[+] EMBL BX604109             [                           GAGCTGGACGTGCAGCAGAAGGTCAAGTACATCCAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAGGAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTGTCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGGCGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAA                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM582402             [                                                                                                                                                                                                                                                                                 CCGAAGGTGCGCAAGCTGCAGCTCGAGATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAACCTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCCAAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCCAAGAAGAATGGCGGCGAGGGGGCCGCATTGGCAGCACCGCCGCCGGCACCGGCAGCAACAGCAGCT      GCAGCAGACCTGGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGC]




>consensus_5561#0
CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATC
CAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAG
GAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTG
TCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGG
CGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAG
ATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAAC
CTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCC
AAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT
TCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCG
AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC
GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT
GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC
CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC
TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC
AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA
CGTCCGCCAAAAAACCTGC

consensusID : consensus_5561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGAAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAAATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG]

[+] EMBL BM651993             [CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATTCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGAAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCGCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTGGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCCACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCTCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCAAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCACGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGAAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAAATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG]




>consensus_5561#1
CCGCCCACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGATT
CGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCGA
AGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCCG
CACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTTG
GCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCCC
ACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTCT
CCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCCA
AGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCAC
GTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAGA
AGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGAA
ATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5561#0      CCGCCCACGCGTCCGAAGCTCTGGGATGAGCTGGACGTGCAGCAGAAGGTCAAGTACATC 60
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      CAGCGGGCATTCCAGAGCCAGTCGGACCAGACCGGCACCGCCAAGCTGAAGCTGACGAAG 120
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      GAGGAGCAGTCCATGCTGCAGGTGGCGGCCGGCAAGCCGGAACCCATCCCGCGGAGCGTG 180
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      TCCGACTACTACCTGAAGCGCTACACCGAGCACGATCCGTCGATGTCGTTGGCGGCCTGG 240
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      CGCAAGGACAAGCTGGCCGAGTACAGATCGCTGCCCAAGGTGCGCAAGCTGCAGCTCGAG 300
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      ATCGAGTACCGGCACGCGAAGCAGGAGTACGTCACCAAGTACCAGGAGTACATCACCAAC 360
consensus_5561#1      ------------------------------------------------------------
                                                                                  

consensus_5561#0      CTGGAGGACGAGACCGCGCGGCAAGCGGAAATCGAGCAGCTGCGCACGTTCATCAAGTCC 420
consensus_5561#1      ----------------------------------------------------------CC 2
                                                                                **

consensus_5561#0      AAGCTGGACAAGGAGGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT 480
consensus_5561#1      GCCC---ACGCGTCCGAAAAGCAGCAGCTCGATAACCGGCCGTTCCAGTCGCTGGTGGAT 59
                         *   **  *   *********************************************

consensus_5561#0      TCGACCGAGGTGTACGACGTGACGCGACCGATCGCAGAATCGACGATCATTAGCGTGCCG 540
consensus_5561#1      TCGACCGAGGTGTACGACGTGACGCGACCGATCGCGGAATCGACGATCATTAGCGTGCCG 119
                      *********************************** ************************

consensus_5561#0      AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC 600
consensus_5561#1      AAGGAGATCAAGAAGGAGAAGAAAAACAAAGCGTCGAAGAAGAATGGCGGCGAGGGGGCC 179
                      ************************************************************

consensus_5561#0      GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT 660
consensus_5561#1      GCACTGGCAGCACCGCCGTCGGCACCGGCAGCAACAGCAGCTGCAGCAGCAGCAGACCTT 239
                      ************************************************************

consensus_5561#0      GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC 720
consensus_5561#1      GGCAGCCCGATTCCGAAACCGATTAAATCGATCCTGAAAAGCCCGACCCCAAAACGGGCC 299
                      ************************************************************

consensus_5561#0      CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC 780
consensus_5561#1      CACCAGGAGGTGGTTGCGGACGAAGCCGCCGTACCGTCGCCGAAGAAGAAGAAAAAGGTC 359
                      ************************************************************

consensus_5561#0      TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC 840
consensus_5561#1      TCCGTTGCGGGCAGCGAATCGGATAGCAACACGGAAAAGCAAGCAAACAACACCAGTTCC 419
                      ************************************************************

consensus_5561#0      AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA 900
consensus_5561#1      AAGGCCAGCAGTGCAGCAGTGGACTCAAACGGACGAACCGGAAAAAGGAAAGAGCCACCA 479
                      ************************************************************

consensus_5561#0      CGTCCGCCAAAAAACCTGC----------------------------------------- 919
consensus_5561#1      CGTCCGCCAAAAAACCTGCTGGAGTACTACCGACAGTTCCACTACCTCGGCAAGGATGAG 539
                      *******************                                         

consensus_5561#0      ------------------------------------------------------------
consensus_5561#1      AAGTGCGAGGAGTCGTTCCGGAACCTTTCCACCCACCGGGAAGGAAACGTTGAAGGCGGA 599
                                                                                  

consensus_5561#0      -------------------------------------------------------
consensus_5561#1      AATGCGCGCAGCAAAGCAGAAATACTTCAAGGACCTGCAGAAGTACCTCAAAACG 654