cluster # 5588

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Anopheles gambiae
cluster # 5588 cluster # 5588 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5588#0 length = 724 sequences # 2

consensus_5588#1 length = 648 sequences # 2

consensusID : consensus_5588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 724
fasta sequence

                              [CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCTTACTTTTAACCCCGTGTGTATCTGCATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGAGATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAGGAGGA]

[+] EMBL BM651112             [CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCTTACTTTTAACCCCGTGTGTATCTGCATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACT                                                                                                                                                                                                                                                         ]
[+] EMBL BM584436             [                                                                ccggacGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGAGATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAGGAGGA]




>consensus_5588#0
CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCTTACTTTTAACCCCGTGTGTATCTG
CATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTT
ATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAAG
CCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAG
ATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGTG
CTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCA
CTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCAC
TGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGG
AATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATC
ATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATG
CTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGAG
ATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAGG
AGGA

consensusID : consensus_5588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 648
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGT--GTGT--GTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGGAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCACCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCGCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC]

[+] EMBL BM635420             [CCGCGGACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGT  GTGT  GTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGGAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGGTACTCGGAG                                                                                                                                                               ]
[+] EMBL BM614337             [                     ccgAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTTTATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGTAAGAGAGGAAGCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGATCACGGCACTGGCGGCCACTGGTGCGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGATACGCCACTGTCGGAATCTCGGTACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCACCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCGCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC]




>consensus_5588#1
CCGCGGACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTATAGGTTGGCCCCCGATC
GTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGTGTGTTTATGTGAT
AAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCGAAGGAAGAGAGGAAGCCGACAAG
ATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAAGATGATGAA
GATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGCGCTGCCCAG
GCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGCACTGGCGGC
CACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCACTGATTGGG
CTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCGGAATCTCGG
TACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCATCACCACGAT
GAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGATGCGCATCAC
GCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5588#0      CCGTCTCTTCTCACTAACCCACAGTGTGATTTTTCT-TACTTTTAACCCCGTGTGTATCT 59
consensus_5588#1      CCGCGG--ACGCGTGGGCGGACGGTAAGCGAGTGCGGTACGGTTA--TAGGTTGGCCCCC 56
                      ***      * *     *  ** **  *    * *  ***  ***     **  *   * 

consensus_5588#0      GCATTTCCACAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGTGAGTGTGCGTT 119
consensus_5588#1      GATCGTCAGCAGCATCCGGCAGCTGATACGAAAGTGAGAGTGAGAGTGT----GTGTGTT 112
                      *    **  ****************************************    *** ***

consensus_5588#0      TATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCCCGAAGTAAGAGAGGAA 179
consensus_5588#1      TATGTGATAAAGTGGTGCGATAAGAATCGACCCGGCGGGAACCC-GAAGGAAGAGAGGAA 171
                      ******************************************** **** **********

consensus_5588#0      GCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAA 239
consensus_5588#1      GCCGACAAGATGTCTGGTGACACGCAGGCCAAGAAGCGGAAGGATAAGAAGAGGAAGAAA 231
                      ************************************************************

consensus_5588#0      GATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCAGCCGGT 299
consensus_5588#1      GATGATGAAGATACGGTGAAGGAAACGACGGTCCATGCACCGAAGCAACCGTCGGCCGGC 291
                      ***************************************************** ***** 

consensus_5588#0      GCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGC 359
consensus_5588#1      GCTGCCCAGGCCGCGAAGGAACCGGGCGATGTGCAGATGCACATCCAGAGCGACCACGGC 351
                      ************************************************************

consensus_5588#0      ACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCA 419
consensus_5588#1      ACTGGCGGCCACTGGTGTGCGAAGGTCGTGTTCTTCATCCTGCTGGCCGGTCTCGGTGCA 411
                      ************************************************************

consensus_5588#0      CTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCG 479
consensus_5588#1      CTGATTGGGCTGATCATTATGGAAAATCAGGGCGTCTCGAACGAGGACACGCCACTGTCG 471
                      ************************************************************

consensus_5588#0      GAATCTCGGTACTCGGAGTTCTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCAT 539
consensus_5588#1      GAATCTCGGTACTCGGAGTTTTTCAACGGTTGGGTGGACGAAAACCGACAGGACGATCAT 531
                      ******************** ***************************************

consensus_5588#0      CATCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGAT 599
consensus_5588#1      CACCACGATGAAGTGCTGGCCGCCATCAACTCGCTGGACGATCACGACGATGAGGGTGAT 591
                      ** *********************************************************

consensus_5588#0      GCTCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGACACGATCAGGACGGA 659
consensus_5588#1      GCGCATCACGCAGTGGAAGATCACGATGGTGGTGATGATGATGGGCACGATCAGGAC--- 648
                      ** ***************************************** ************   

consensus_5588#0      GATGATGATGATCACGATGATGGTGCACCGTACGCAGAGGAGGAAGATCACGACGATGAG 719
consensus_5588#1      ------------------------------------------------------------
                                                                                  

consensus_5588#0      GAGGA 724
consensus_5588#1      -----