These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1233 fasta sequence [CCGTGACTTCCGGGGGCGGCTGTGCCACTGGATCCGTCCCCGCTGCCCAACCGGCCCCGGCAGCTGCAGCCCCGGCCGCTGCAGGCGCACCGAGCGAGCAGAAAACTGAACCGACTAACGATCAATCGAAGGAGCAGGAAATTCAATCGCAGCAACCATCGACGACCGCTGGCAATGGTAATGGCAAAGCGAATCAGATGATTTCCTTCCACAAGGAAACGGAGGGAACCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAATGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTGACGTCTCCGCTGCTACGTGAAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGCGGGGAAAATGGAAACATCCCAGTAAGGAACCGGTAAAAAGAAGAAACGAATGAATTTCTTTTCCTGTGTAAACCTCATCTCGGTAGTATAGAGTGGGTATCAATTTTATGCAAAAAAACCATCCTCATCCTACTGCTTCGTGCGAGTATTCAGTCTGTCTGTCCCGATTATGTTACACCGCTAC] [+] EMBL BM633426 [CCGTGACTTCCGGGGGCGGCTGTGCCACTGGATCCGTCCCCGCTGCCCAACCGGCCCCGGCAGCTGCAGCCCCGGCCGCTGCAGGCGCACCGAGCGAGCAGAAAACTGAACCGACTAACGATCAATCGAAGGAGCAGGAAATTCAATCGCAGCAACCATCGACGACCGCTGGCAATGGTAATGGCAAAGCGAATCAGATGATTTCCTTCCACAAGGAAACGGAGGGAACCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAATGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTGACGTCTCCGCTGCTACGTGAAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGC ] [+] EMBL BM584459 [ ccgGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGCGGGGAAAATGGAAACATCCCAGTAAGGAACCGGTAAAAAGAAGAAACGAATGAATTTCTTTTCCTGTGTAAACCTCATCTCGGTAGTATAGAGTGGGTATCAATTTTATGCAAAAAAACCATCCTCATCCTACTGCTTCGTGCGAGTATTCAGTCTGTCTGTCCCGATTATGTTACACCGCTAC] consensusID : consensus_5591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 936 fasta sequence [CCGCCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAACGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTCACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGAATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATGCAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCCATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCTGCGGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGGCGGGG] [+] EMBL BM632592 [CCGCCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAACGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTCACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGAATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATGCAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCCATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCTGCGGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAG ] [+] EMBL BM584858 [ ccgCTGACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGAATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATGCAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGGCGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5591#0 CCGTGACTTCCGGGGGCGGCTGTGCCACTGGATCCGTCCCCGCTGCCCAACCGGCCCCGG 60 consensus_5591#1 ------------------------------------------------------------ consensus_5591#0 CAGCTGCAGCCCCGGCCGCTGCAGGCGCACCGAGCGAGCAGAAAACTGAACCGACTAACG 120 consensus_5591#1 ------------------------------------------------------------ consensus_5591#0 ATCAATCGAAGGAGCAGGAAATTCAATCGCAGCAACCATCGACGACCGCTGGCAATGGTA 180 consensus_5591#1 ------------------------------------------------------------ consensus_5591#0 ATGGCAAAGCGAATCAGATGATTTCCTTCCACAAGGAAACGGAGGGAACCACAATCCGTC 240 consensus_5591#1 ---------------------------------------------CCGCCACAATCCGTC 15 ************ consensus_5591#0 TGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACA 300 consensus_5591#1 TGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACA 75 ************************************************************ consensus_5591#0 ACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAATGCG 360 consensus_5591#1 ACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAACGCG 135 ******************************************************** *** consensus_5591#0 TTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGA 420 consensus_5591#1 TTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGA 195 ************************************************************ consensus_5591#0 CAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATAT 480 consensus_5591#1 CAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATAT 255 ************************************************************ consensus_5591#0 CTCTGACGTCTCCGCTGCTACGTGAAG--------------------------------- 507 consensus_5591#1 CTCTCACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGA 315 **** ********************** consensus_5591#0 ------------------------------------------------------------ consensus_5591#1 ATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATG 375 consensus_5591#0 --------------GCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTA 553 consensus_5591#1 CAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTA 435 ********************************************** consensus_5591#0 TGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGC 613 consensus_5591#1 TGCGCGATCTGTGCCAACGGATACCCATCTGGAGCCACATTAGTCAATGGGCGATGGAGC 495 ************************* ********************************** consensus_5591#0 TGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGC 673 consensus_5591#1 TGTTGCTGGAAAAGATCATCTCGTCTGCGGGCGAAGTACTCACGCCGGGCGAATGCTTGC 555 ************************* ** ******************************* consensus_5591#0 GCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATC 733 consensus_5591#1 GCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATC 615 ************************************************************ consensus_5591#0 CGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACA 793 consensus_5591#1 CGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACA 675 ************************************************************ consensus_5591#0 TTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGC 853 consensus_5591#1 TTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGC 735 ************************************************************ consensus_5591#0 TCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATC 913 consensus_5591#1 TCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATC 795 ************************************************************ consensus_5591#0 GCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGT 973 consensus_5591#1 GCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGT 855 ************************************************************ consensus_5591#0 TAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAA 1033 consensus_5591#1 TAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAA 915 ************************************************************ consensus_5591#0 CCAACAATGCCACGGCGGGGAAAATGGAAACATCCCAGTAAGGAACCGGTAAAAAGAAGA 1093 consensus_5591#1 CCAACAATGCCACGGGCGGGG--------------------------------------- 936 *************** *** consensus_5591#0 AACGAATGAATTTCTTTTCCTGTGTAAACCTCATCTCGGTAGTATAGAGTGGGTATCAAT 1153 consensus_5591#1 ------------------------------------------------------------ consensus_5591#0 TTTATGCAAAAAAACCATCCTCATCCTACTGCTTCGTGCGAGTATTCAGTCTGTCTGTCC 1213 consensus_5591#1 ------------------------------------------------------------ consensus_5591#0 CGATTATGTTACACCGCTAC 1233 consensus_5591#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||