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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1233 fasta sequence
[CCGTGACTTCCGGGGGCGGCTGTGCCACTGGATCCGTCCCCGCTGCCCAACCGGCCCCGGCAGCTGCAGCCCCGGCCGCTGCAGGCGCACCGAGCGAGCAGAAAACTGAACCGACTAACGATCAATCGAAGGAGCAGGAAATTCAATCGCAGCAACCATCGACGACCGCTGGCAATGGTAATGGCAAAGCGAATCAGATGATTTCCTTCCACAAGGAAACGGAGGGAACCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAATGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTGACGTCTCCGCTGCTACGTGAAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGCGGGGAAAATGGAAACATCCCAGTAAGGAACCGGTAAAAAGAAGAAACGAATGAATTTCTTTTCCTGTGTAAACCTCATCTCGGTAGTATAGAGTGGGTATCAATTTTATGCAAAAAAACCATCCTCATCCTACTGCTTCGTGCGAGTATTCAGTCTGTCTGTCCCGATTATGTTACACCGCTAC]
[+] EMBL BM633426 [CCGTGACTTCCGGGGGCGGCTGTGCCACTGGATCCGTCCCCGCTGCCCAACCGGCCCCGGCAGCTGCAGCCCCGGCCGCTGCAGGCGCACCGAGCGAGCAGAAAACTGAACCGACTAACGATCAATCGAAGGAGCAGGAAATTCAATCGCAGCAACCATCGACGACCGCTGGCAATGGTAATGGCAAAGCGAATCAGATGATTTCCTTCCACAAGGAAACGGAGGGAACCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAATGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTGACGTCTCCGCTGCTACGTGAAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGC ]
[+] EMBL BM584459 [ ccgGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGCGGGGAAAATGGAAACATCCCAGTAAGGAACCGGTAAAAAGAAGAAACGAATGAATTTCTTTTCCTGTGTAAACCTCATCTCGGTAGTATAGAGTGGGTATCAATTTTATGCAAAAAAACCATCCTCATCCTACTGCTTCGTGCGAGTATTCAGTCTGTCTGTCCCGATTATGTTACACCGCTAC]
consensusID : consensus_5591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 936 fasta sequence
[CCGCCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAACGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTCACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGAATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATGCAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCCATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCTGCGGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGGCGGGG]
[+] EMBL BM632592 [CCGCCACAATCCGTCTGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACAACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAACGCGTTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGACAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATATCTCTCACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGAATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATGCAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCCATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCTGCGGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAG ]
[+] EMBL BM584858 [ ccgCTGACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGAATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATGCAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTATGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGCTGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGCGCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATCCGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACATTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGCTCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATCGCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGTTAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAACCAACAATGCCACGGGCGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5591#0 CCGTGACTTCCGGGGGCGGCTGTGCCACTGGATCCGTCCCCGCTGCCCAACCGGCCCCGG 60
consensus_5591#1 ------------------------------------------------------------
consensus_5591#0 CAGCTGCAGCCCCGGCCGCTGCAGGCGCACCGAGCGAGCAGAAAACTGAACCGACTAACG 120
consensus_5591#1 ------------------------------------------------------------
consensus_5591#0 ATCAATCGAAGGAGCAGGAAATTCAATCGCAGCAACCATCGACGACCGCTGGCAATGGTA 180
consensus_5591#1 ------------------------------------------------------------
consensus_5591#0 ATGGCAAAGCGAATCAGATGATTTCCTTCCACAAGGAAACGGAGGGAACCACAATCCGTC 240
consensus_5591#1 ---------------------------------------------CCGCCACAATCCGTC 15
************
consensus_5591#0 TGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACA 300
consensus_5591#1 TGCTGAAGGGTGTGATGCGCGTCGGTTTGCTCGCTAAGGGGCTGCTGCTACACGGCGACA 75
************************************************************
consensus_5591#0 ACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAATGCG 360
consensus_5591#1 ACTGTGTACAGCTCGTGGTGCTGTGTGCCGAGAAACCGACGACGTCGCTGTTGAAACGCG 135
******************************************************** ***
consensus_5591#0 TTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGA 420
consensus_5591#1 TTGCAACGGAGCTGCCAATACAGCTGAAGAAAATTGCCGAAGACCATCGTTACACGGTGA 195
************************************************************
consensus_5591#0 CAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATAT 480
consensus_5591#1 CAATGGCACCAGTCGAAGGCGCTGTGCTCGTTACCGATGGTACGATTACGGTGAAAATAT 255
************************************************************
consensus_5591#0 CTCTGACGTCTCCGCTGCTACGTGAAG--------------------------------- 507
consensus_5591#1 CTCTCACGTCTCCGCTGCTACGTGAAGCTAATGCACCTTCAGCGGAGCAGGCTGCTCAGA 315
**** **********************
consensus_5591#0 ------------------------------------------------------------
consensus_5591#1 ATACCGAAGATCTGCTGCCACGCGAGCCCTGCCTGCAGGCGCTAGCCGCACTGCGTCATG 375
consensus_5591#0 --------------GCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTA 553
consensus_5591#1 CAAAATGGTTCCAGGCTAGAGCGACAGGGCTCCAATCCTGCGTAATGATAATGCGCATTA 435
**********************************************
consensus_5591#0 TGCGCGATCTGTGCCAACGGATACCTATCTGGAGCCACATTAGTCAATGGGCGATGGAGC 613
consensus_5591#1 TGCGCGATCTGTGCCAACGGATACCCATCTGGAGCCACATTAGTCAATGGGCGATGGAGC 495
************************* **********************************
consensus_5591#0 TGTTGCTGGAAAAGATCATCTCGTCAGCCGGCGAAGTACTCACGCCGGGCGAATGCTTGC 673
consensus_5591#1 TGTTGCTGGAAAAGATCATCTCGTCTGCGGGCGAAGTACTCACGCCGGGCGAATGCTTGC 555
************************* ** *******************************
consensus_5591#0 GCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATC 733
consensus_5591#1 GCCGCGTCATGGAAGCGATCTCATCCGCTATCCTTATCAACGGTCCCGGGCTGCTGGATC 615
************************************************************
consensus_5591#0 CGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACA 793
consensus_5591#1 CGTGCGAAAAGGAACCGGAAGATACGCTGGCCGGTCTGAGCAAGCAGCAGCGCGAGGACA 675
************************************************************
consensus_5591#0 TTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGC 853
consensus_5591#1 TTACCGTCTCGGCGCAGATGTTCCTGCGCTGCATCGCCTTCCGGCAGATCTACAAGGTGC 735
************************************************************
consensus_5591#0 TCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATC 913
consensus_5591#1 TCGGCATCGAACCGCTACCGCCACCGAAGTTTGCCGGCAGCCGCAACTGGCGCTTCAATC 795
************************************************************
consensus_5591#0 GCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGT 973
consensus_5591#1 GCAAACGTCGCCGCTCTGGTACGGAGGGCAACGACAGTGAAGCTGATGGAAGCAAGATGT 855
************************************************************
consensus_5591#0 TAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAA 1033
consensus_5591#1 TAAAGAAGGACGAATCAGGTGCTTCTTCTGCTTCATCTGGAGCTGCATCGGCGACTGGAA 915
************************************************************
consensus_5591#0 CCAACAATGCCACGGCGGGGAAAATGGAAACATCCCAGTAAGGAACCGGTAAAAAGAAGA 1093
consensus_5591#1 CCAACAATGCCACGGGCGGGG--------------------------------------- 936
*************** ***
consensus_5591#0 AACGAATGAATTTCTTTTCCTGTGTAAACCTCATCTCGGTAGTATAGAGTGGGTATCAAT 1153
consensus_5591#1 ------------------------------------------------------------
consensus_5591#0 TTTATGCAAAAAAACCATCCTCATCCTACTGCTTCGTGCGAGTATTCAGTCTGTCTGTCC 1213
consensus_5591#1 ------------------------------------------------------------
consensus_5591#0 CGATTATGTTACACCGCTAC 1233
consensus_5591#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||