|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence
[AAATCGTATCCTGAGAATTGTAACATACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTGGTTGATTGTCTCTCTGTACGATCTACCCCTTGCTCTCTTGCTTGCTTCCTCCCTATGTGTTTTCCCGTCTTGGTATCTCTCTCTCTCTCTCTCGCGCGCGCTGTCGATCTGTTTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTCTTTACGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGTGCTTCGCAATTATGGAATGCAAGCCATTTAATGATTATTTAATCGAGCGGCAAACCAACAATGCATATAGTTTGTCACAACACACACACTGTTAAAAAGCTTACTAATAATGATAAAACTTTTGAGCGGAAGGTTAAAGCGGCCACCGTTCTCGACGCGCTTAAAAACACGCAAAAGCCTGAGGAGCACCAGCATCATCCCCACCAGCCCCCTCCCCTTGAAAAGGGTTGTTAAAAGACGACAAATGGAAAAGAATACATATTTTTTATGATAAATTATATAAAACCATATACATATACATACACAGATATCTTTACATATACAGTACGAAAGAGTAATAATTAACACCGTAGGTAAGAAGAAGCATGGTTTAGGCGGCAGGTGCAGCAGTAGAAGACGAGTGTGCATATAAGAAAGGATAAATAGAATAAATAATTCGACCGTAGAANGTCAGAGATCGGATCATATGAGTCGCCCCGGCATCATCTCAAGCACTATATCTG]
[+] EMBL BX625629 [AAATCGTATCCTGAGAATTGTAACATACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTGGTTGATTGTCTCTCTGTACGATCTACCCCTTGCTCTCTTGCTTGCTTCCTCCCTATGTGTTTTCCCGTCTTGGTATCTCTCTCTCTCTCTCTCGCGCGCGCTGTCGATCTGTTTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTCTTTACGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGTGCTTCGCAATTATGGAATGCAAGCCATTTAATGATTATTTAATCGAGCGGCAAACCAACAATGCATATAGTTTGTCACAACACACACACTGTTAAAAAGCTTACTAATAATGATAAAACTTTTGAGCGGAAGGTTAAAGCGGCCACCGTTCTCGACGCGCTTAAAAACACGCAAAAGCCTGAGGAGCACCAGCATCATCCCCACCAGCCCCCTCCCCTTGAAAAGGGTTGTTAAAAGACGACAAATGGAAAAGAATACATATTTTTTATGATAAATTATATAAAACCATATACATATACATACACAGATATCTTTACATATACAGTACGAAAGAGTAATAATTAACACCGTAGGTAAGAAGAAGCATGGTTTAGGCGGCAGGTGCAGCAGTAGAAGACGAGTGTGCATATAAGAAAGGATAAATAGAATAAATAATTCGACCGTAGAANGTCAGAGATCGGATCATATGAGTCGCCCCGGCATCATCTCAAGCACTATATCTG]
consensusID : consensus_5597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[GTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTTTCTGTTACGTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTTAGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAAATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTTGGTCGATTTGTCTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTGTTTATGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGNGCTTCGCAATTATGGAATGCAAGCCATTTATGATTATTTAATCGAGCGGCAA]
[+] EMBL BX622137 [GTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTTTCTGTTACGTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTTAGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAAATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTTGGTCGATTTGTCTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTGTTTATGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGNGCTTCGCAATTATGGAATGCAAGCCATTTATGATTATTTAATCGAGCGGCAA]
[+] EMBL BX625815 [ TTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTNGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTTTCTGTTACGTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTTAGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAAATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGT ]
consensusID : consensus_5597#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGCCCACGCGTCCGGCTGCACGATAATTGCGTGTAAATGTGGGAGTCGCTTTCCATTACACCTTTCCATCATCCTGATTATCATCGTGTAATATGCTCTCCTATAAATATCTGTTTGCATCGATTTAATCCCTTCATTTACGAGAAGAAAAACAAGAGCGAGAGAGAAAGAGAGATATTAATTACGATTAGTGAGATTTAGGGGGACAAACAGTTTGTGGTACGGTTTAATTTATTACTATTTAGTACGGAATGAAGTATGGCAGGTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTT]
[+] EMBL BM584996 [CCGCCCACGCGTCCGGCTGCACGATAATTGCGTGTAAATGTGGGAGTCGCTTTCCATTACACCTTTCCATCATCCTGATTATCATCGTGTAATATGCTCTCCTATAAATATCTGTTTGCATCGATTTAATCCCTTCATTTACGAGAAGAAAAACAAGAGCGAGAGAGAAAGAGAGATATTAATTACGATTAGTGAGATTTAGGGGGACAAACAGTTTGTGGTACGGTTTAATTTATTACTATTTAGTACGGAATGAAGTATGGCAGGTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5597#1 ------------------------------------------------------------
consensus_5597#2 CCGCCCACGCGTCCGGCTGCACGATAATTGCGTGTAAATGTGGGAGTCGCTTTCCATTAC 60
consensus_5597#0 -------AAATCGTATCCTGAGAATTGTAACATACACATACACACACAAACACATTTTAT 53
consensus_5597#1 ------------------------------------------------------------
consensus_5597#2 ACCTTTCCATCATCCTGATTATCATCGTGTAATATGCTCTCCTATAAATATCTGTTTGCA 120
consensus_5597#0 ACAAGACCATTAGCGTGGTAGTACGGATTTGGTTGATTGTCTCTCTGTACGATCTACCCC 113
consensus_5597#1 ------------------------------------------------------------
consensus_5597#2 TCGATTTAATCCCTTCATTTACGAGAAGAAAAACAAGAGCGAGAGAGAAAGAGAGATATT 180
consensus_5597#0 TTGCTCTCTTGCTTGCTTCCTCCCTATGTGTTTTCCCGTCTTGGTATCTCTCTCTCTCTC 173
consensus_5597#1 ------------------------------------------------------------
consensus_5597#2 AATTACGATTAGTGAGATTTAGGGGGACAAACAGTTTGTGGTACGGTTTAATTTATTACT 240
consensus_5597#0 TCTCGCGCGCGCTGTCGATCTGTTTG-TATACTTTGCAAGGGTTACTTTGCTTTATCGCT 232
consensus_5597#1 --------------------------GTGTCGCGATCACGACACGCAGCAGGGCATTCGC 34
consensus_5597#2 ATTTAGTACGGAATGAAGTATGGCAGGTGTCGCGATCACGACACGCAGCAGGGCATTCGC 300
consensus_5597#0 CAGTACTTCTTTACGGTGTTAGGCACCACTTAC--TCGCGGTAT-CGTTAATTGACCTTT 289
* * ** ** * * * *
consensus_5597#1 TCCGTTAATTCTCGATACTAGTAGTAGCAGTG-AATAGAAGTTAGTTTAGGACCTGTCCA 93
consensus_5597#2 TCCGTTAATTCTCGATACTAGTAGTAGCAGTG-AATAGAAGTTAGTTTAGGACCTGTCCA 359
consensus_5597#0 TTCCCAGGCGCAAGGTGCT--TCGCAATTATGGAATGCAAGCCATTTAATGATTATTTAA 347
* * * * * ** * * * ** *** *** * ** * ** * *
consensus_5597#1 CACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTT 153
consensus_5597#2 CACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTT 419
consensus_5597#0 TCGAGCGGCAAACCAACAATGCATATAGTTTGTCACAACACACACACTGTTAAAAAGCTT 407
* ** ** * * * ** * * *** ** ****
consensus_5597#1 TTTAGTTTTGGTTCAGCTACTG---------CTGAAGTGAGCACC----CAGAAGCTGTT 200
consensus_5597#2 TTTAGTTTTGGTTCAGCTACTG---------CTGAAGTGAGCACC----CAGAAGCTGTT 466
consensus_5597#0 ACTAATAATGATAAAACTTTTGAGCGGAAGGTTAAAGCGGCCACCGTTCTCGACGCGCTT 467
** * ** * * ** ** * *** * **** ** ** **
consensus_5597#1 AAAA-TGTGTGTGTTCTTCTTGTGCAA----ACCGTTCGTGGCGATCGTGCTCAGGTGAG 255
consensus_5597#2 AAAA-TGTGTGTGTTCTTCTTGTGCAA----ACCGTTCGTGGCGATCGTGCTCAGGTGAG 521
consensus_5597#0 AAAAACACGCAAAAGCCTGAGGAGCACCAGCATCATCCCCACCAGCCCCCTCCCCTTGAA 527
**** * * * * *** * * * * * * * ***
consensus_5597#1 AAGGTAAATGAGAATTCAATTGA-GAAGTAGAATGAGCAAAACGAGGGA-GAATTGTGTG 313
consensus_5597#2 AAGGTAAATGAGAATTCAATTGA-GAAGTAGAATGAGCAAAACGAGGGA-GAATTGTGTG 579
consensus_5597#0 AAGGGTTGTTAAAAGACGACAAATGGAAAAGAATACATATTTTTTATGATAAATTATATA 587
**** * * ** * * * * * ***** * ** **** * *
consensus_5597#1 GAACTATTGTTTTAGTTCATTTCTCAAACAACT----ACATACAGTCAAAGACACACACA 369
consensus_5597#2 GAACTATTGTTTTAGTTCATTTCTCAAACAACT----ACATACAGTCAAAGACACACACA 635
consensus_5597#0 AAACCAT-ATACATATACATA-CACAGATATCTTTACATATACAGTACGAAAGAGTAATA 645
*** ** * * *** * ** * * ** * ******* * * * * *
consensus_5597#1 CTTCAGAT-ACACTTACACATACTCACG---CACGCACATTGCCGAACGGTTTCTGTTAC 425
consensus_5597#2 CTTCAGAT-ACACTTACACATACTCACG---CACGCACATTGCCGAACGGTT-------- 683
consensus_5597#0 ATTAACACCGTAGGTAAGAAGAAGCATGGTTTAGGCGGCAGGTGCAGCAGTAGAAGACGA 705
** * * * ** * * ** * * ** * * * **
consensus_5597#1 GTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTT 485
consensus_5597#2 ------------------------------------------------------------
consensus_5597#0 GTGTGCATATAAGAAAGGATAAATAGAATAAATAATTCGACCGTAGAANGTCAGAGATCG 765
consensus_5597#1 AGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAA 545
consensus_5597#2 ------------------------------------------------------------
consensus_5597#0 GATCATATGAGTCGCCCCGGCATCATCTCAAGCACTATATCTG----------------- 808
consensus_5597#1 ATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGAC 605
consensus_5597#2 ------------------------------------------------------------
consensus_5597#0 ------------------------------------------------------------
consensus_5597#1 CATTAGCGTGGTAGTACGGATTTTGGTCGATTTGTCTGTATACTTTGCAAGGGTTACTTT 665
consensus_5597#2 ------------------------------------------------------------
consensus_5597#0 ------------------------------------------------------------
consensus_5597#1 GCTTTATCGCTCAGTACTTGTTTATGGTGTTAGGCACCACTTACTCGCGGTATCGTTAAT 725
consensus_5597#2 ------------------------------------------------------------
consensus_5597#0 ------------------------------------------------------------
consensus_5597#1 TGACCTTTTTCCCAGGCGCAAGGNGCTTCGCAATTATGGAATGCAAGCCATTTATGATTA 785
consensus_5597#2 ------------------------------------------------------------
consensus_5597#0 ------------------------------------------------------------
consensus_5597#1 TTTAATCGAGCGGCAA 801
consensus_5597#2 ----------------
consensus_5597#0 ----------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||