|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1313 fasta sequence
[CCGCCCACGCGTCCGAAAATG-G-CGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA-T-CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATCTCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTCAGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCATGGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTATATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCACGGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGATCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCAGAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGATAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGACGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAACACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT]
[+] EMBL BM586918 [CCGCCCACGCGTCCGAAAATG G CGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA TCCAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACA ]
[+] EMBL BM596241 [CCGCCCACGCGTCCGCCCACGCGTCCGAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATTCTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCCCGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATT CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAACTATTC ]
[+] EMBL BX621654 [ GATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCTCGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA T CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATCTCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTCAGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCATGGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTATATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCACGGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGATCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCAGAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGATAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGACGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAACACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT]
consensusID : consensus_5617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence
[ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG]
[+] EMBL BX628412 [ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5617#0 CCGCCCACGCGTCCGAAAATGGCGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAAT 60
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 AATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAAC 120
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 ATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCA 180
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGA 240
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 ACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTC 300
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAA 360
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 CGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGAT 420
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTT 480
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 CTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAAT 540
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 GCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATCAACGGTTCAGT 600
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAG 660
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 CTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATC 720
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTC 780
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 AGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCAT 840
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 GGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTAT 900
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 ATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCAC 960
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 GGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGA 1020
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCA 1080
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 GAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGA 1140
consensus_5617#1 ------------------------------------------------------------
consensus_5617#0 TAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGA 1200
consensus_5617#1 --------------------------------------ATANTCTAACCNTATCTATGGA 22
*** **** ** **********
consensus_5617#0 CGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATA-GCAATCCTGTGATGGAAA 1259
consensus_5617#1 CGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAA 82
*** ************************************* *** **** *********
consensus_5617#0 CACACTCG-CTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT 1313
consensus_5617#1 CACCCTCGGCTGCCCCAACG----------------------------------- 102
*** **** ***********
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||