cluster # 5625

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Anopheles gambiae
cluster # 5625 cluster # 5625 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5625#0 length = 708 sequences # 3

consensus_5625#1 length = 476 sequences # 1

consensusID : consensus_5625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 708
fasta sequence

                              [CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTTCTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGGGAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAACAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC]

[+] EMBL BM629236             [CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTTCTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGGGAGTTTTCATTTCT                                                                                              ]
[+] EMBL BM602874             [                    ccgGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGAC                                                                                                                                                                                                           ]
[+] EMBL BM629483             [                          ccgGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTGCAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTTCTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGGGAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAACAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC]




>consensus_5625#0
CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGA
ATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCAT
CGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTG
AAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTG
CAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACAT
TGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTA
TTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCA
TATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTG
CAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTT
CTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGG
GAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAA
CAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC

consensusID : consensus_5625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT]

[+] EMBL BM587358             [CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT]




>consensus_5625#1
CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGAATG
CAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTATCGC
GGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTGAAG
ATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTGCAG
GAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACATTGC
AGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTATTT
CAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCATAT
TGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5625#0      CCGCGGACGCGTGGGGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGA 60
consensus_5625#1      ---CCGAAACCCTGTGCTGTGTAGTCGACGTATACTTGTGTAGTGTGCTGCATTTTGTGA 57
                         * **  *   * *********************************************

consensus_5625#0      ATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACCAT 120
consensus_5625#1      ATGCAGTATTGTGCTCTCTGATTACTGTACCTATTTTAGTGAGACCATATCTCGAACTAT 117
                      ********************************************************* **

consensus_5625#0      CGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTG 180
consensus_5625#1      CGCGGTTGAGGCAGTGACTGAATGCCATACTATAATCAACAATCAGAAAGATGGGTCTTG 177
                      ************************************************************

consensus_5625#0      AAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTG 240
consensus_5625#1      AAGATATTTCTTCTCCGGTGTTTACCATCGATAGCAACAAAGTATCAATGCCGGATATTG 237
                      ************************************************************

consensus_5625#0      CAGGAAAGACTCATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACAT 300
consensus_5625#1      CAGGAAAGACTTATACTTTTGACGAAGTGATAGATATTATAGGTTTTGGTCAAACCACAT 297
                      *********** ************************************************

consensus_5625#0      TGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTA 360
consensus_5625#1      TGCAGATCTTTATAGCTTCTTCTATAATAATGATGGCAGTCTTGAATGAAACAATGGGTA 357
                      ************************************************************

consensus_5625#0      TTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCA 420
consensus_5625#1      TTTCAATAGTAATTCCAGCGGCACAGTGCGATCTTAATCTATCGGCCACTGATAAAGGCA 417
                      ************************************************************

consensus_5625#0      TATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATTG 480
consensus_5625#1      TATTGACTGGAGTAAGTTTTGCTGGCATTATCGTTTCGTCACACTTCTGGGGTTATATT- 476
                      *********************************************************** 

consensus_5625#0      CAGATACAAAAGGTCGCCGTAGGACGCTAATCGTGTCACTGCTGTTAACCGCAGTCTGTT 540
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      CTCTGGTGTCCAGTTTATCCATCAACTACACAATGATGGTGGTTATGCGCTTTCTGGTGG 600
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      GAGTTTTCATTTCTGCACCGTCGGCTACCATATTCGCCTATCTGGGAGAATTTTTCAAAA 660
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      CAGCAAACCGTACCCTGGTAATAACTTATTCAAGCACTGCAGTGGGAC 708
consensus_5625#1      ------------------------------------------------