cluster # 5634

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Anopheles gambiae
cluster # 5634 cluster # 5634 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5634#0 length = 722 sequences # 3

consensus_5634#1 length = 462 sequences # 1

consensusID : consensus_5634#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 722
fasta sequence

                              [CTCCCGCCAACGGCTAGGATTGTCGCCAACGGTAGAGAGTTGCACCTGTTCAATCTCGAGCCGGAAGATGCTGGTACATACCAGTGCGGCATGTCCTATCCGGACGGCACGGTCGTGTACGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGAGCATTGTTTTGCGCAAAAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAGATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGGCAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGACACTATCGTTTCCAATGCTGCTTCG-ATGTCTAG-ATAATCTTTCAAAATTTTAGCTACGCTTCGTTAGGTTGAAGTTGTTT-CCCCACATCCAAACAAAAAGCCCTGTA-GAAGTAATTGTAAAAGATTCAAGCGCTATAGCGTAGTTTAAATTTTGAGAACAGCCAGTAGCCTT-CCTAGTACTTGGCATCTTGGA-ACGTATGGAACGTAAGCACAGGACACAGGTCAGANGTTAGATNTTTATATTAATAGATATNTTTATCGAGCATGCTGTTGTATCATTTCAACGTT]

[+] EMBL BX624099             [CTCCCGCCAACGGCTAGGATTGTCGCCAACGGTAGAGAGTTGCACCTGTTCAATCTCGAGCCGGAAGATGCTGGTACATACCAGTGCGGCATGTCCTATCCGGACGGCACGGTCGTGTACGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGAGCATTGTTTTGCGCAAAAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAGATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGGCAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGACACTATCGTTTCCAATGCTGCTTCG ATGTCTAG ATAATCTTTCAAAATTTTAGCTACGCTTCGTTAGGTTGAAGTTGTTT CCCCACATCCAAACAAAAAGCCCTGTA GAAGTAATTGTAAAAGATTCAAGCGCTATAGCGTAGTTTAAATTTTGAGAACAGCCAGTAGCCTT CCTAGTACTTGGCATCTTGGA ACGTATGGAACGTAAGCACAGGACACAGGTCAGANGTTAG                                                       ]
[+] EMBL BX619236             [                                                                                                                                                                                                                        AATCCTTCGACGCAAAACCCCAGATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGGCAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGACACTATCGTTTCCAATGCTGCTTCGCATGTCTAGCATAATCTTTCAAAATTTTAGCTACGCTTCGTTAGGTTGAAGTTGTTTCCCCCACATCCAAACAAAAAGCCCTGTACGACGTCATCGTAAAAGATNCCAGCGCCATAGCGTAGTTTAAATCTCGAGAACCGCCAGTCCCCTN CCTAGTACTTGGCATCTNGGA ACATATGGAc                                                                                     ]
[+] EMBL BX619113             [                                                                                                                                                                                                                                                 TGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGGCAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGACACTATCGTTTCCAATGCTGCTTCG ATGTCTAG ATAATCTTTCAAAATTTTAGCTACGCTTCGTTAGGTTGAAGTTGTTT CCCCACATCCAAACAAAAAGCCCTGTA GAAGTAATTGTAAAAGATTCAAGCGCTATAGCGTAGTTTAAATTTTGAGANCAGCCAGTAGCCTTCCCTAGTACTTGGCATCTTGGANNCGTATGGAACGTAAGCACAGGACACAGGTCAGAGGTTAGATNTTTATATTAATAGATATNTTTATCGAGCATGCTGTTGTATCATTTCAACGTT]




>consensus_5634#0
CTCCCGCCAACGGCTAGGATTGTCGCCAACGGTAGAGAGTTGCACCTGTTCAATCTCGAG
CCGGAAGATGCTGGTACATACCAGTGCGGCATGTCCTATCCGGACGGCACGGTCGTGTAC
GATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGAGCATTGTTTTGCGCAAA
AGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAGA
TTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTAC
ACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGGCAATTGGGGAAAGCAAGAAAACAGG
CAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAG
GATCATGGGTTAGACACTATCGTTTCCAATGCTGCTTCGATGTCTAGATAATCTTTCAAA
ATTTTAGCTACGCTTCGTTAGGTTGAAGTTGTTTCCCCACATCCAAACAAAAAGCCCTGT
AGAAGTAATTGTAAAAGATTCAAGCGCTATAGCGTAGTTTAAATTTTGAGAACAGCCAGT
AGCCTTCCTAGTACTTGGCATCTTGGAACGTATGGAACGTAAGCACAGGACACAGGTCAG
ANGTTAGATNTTTATATTAATAGATATNTTTATCGAGCATGCTGTTGTATCATTTCAACG
TT

consensusID : consensus_5634#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [ACGGCACGAGGGTTNATTCTCGAGCCGGAAGATGCTGGTACNTACCAGTGCGGCATGTCCTANGCCGGACGGCACGGTCGTGTACGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGCGCATTGTTTTGCGCAAAAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAGATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGACAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGAAACTGTCGTTTCCAATGCTGCTTCGATGTCTAGATAATCTTTCAAAATTTTAGCTACGCTTCG]

[+] EMBL BX619685             [ACGGCACGAGGGTTNATTCTCGAGCCGGAAGATGCTGGTACNTACCAGTGCGGCATGTCCTANGCCGGACGGCACGGTCGTGTACGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGCGCATTGTTTTGCGCAAAAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAGATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGACAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGAAACTGTCGTTTCCAATGCTGCTTCGATGTCTAGATAATCTTTCAAAATTTTAGCTACGCTTCG]




>consensus_5634#1
ACGGCACGAGGGTTNATTCTCGAGCCGGAAGATGCTGGTACNTACCAGTGCGGCATGTCC
TANGCCGGACGGCACGGTCGTGTACGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTA
GGCATCGCGCATTGTTTTGCGCAAAAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGC
AAATCCTTCGACGCAAAACCCCAGATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCG
AATCAAAAACACCCAGAAACAGTACACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGA
CAATTGGGGAAAGCAAGAAAACAGGCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCA
TCGTCTTTGGGAGAGATCGCTTAAGGATCATGGGTTAGAAACTGTCGTTTCCAATGCTGC
TTCGATGTCTAGATAATCTTTCAAAATTTTAGCTACGCTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5634#0      CTCCCGCCAACGGCTAGGATTGTCGCCAACGGTAGAGAGTTGCACCTGTTCAATCTCGAG 60
consensus_5634#1      ------------------------------------ACGGCACGAGGGTTNATTCTCGAG 24
                                                            *   *    *** * *******

consensus_5634#0      CCGGAAGATGCTGGTACATACCAGTGCGGCATGTCCTAT-CCGGACGGCACGGTCGTGTA 119
consensus_5634#1      CCGGAAGATGCTGGTACNTACCAGTGCGGCATGTCCTANGCCGGACGGCACGGTCGTGTA 84
                      ***************** ********************  ********************

consensus_5634#0      CGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGAGCATTGTTTTGCGCAA 179
consensus_5634#1      CGATTCTATAGTGCTAACGGTCGGTAAGTATAAGTAGGCATCGCGCATTGTTTTGCGCAA 144
                      ******************************************* ****************

consensus_5634#0      AAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAG 239
consensus_5634#1      AAGGAACCGGTAGTGTAGCGCACAACCAAACAAAGCAAATCCTTCGACGCAAAACCCCAG 204
                      ************************************************************

consensus_5634#0      ATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTA 299
consensus_5634#1      ATTGACAAGCGGTGGTGGTGGTGGGAGCTTTAAGCGAATCAAAAACACCCAGAAACAGTA 264
                      ************************************************************

consensus_5634#0      CACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGGCAATTGGGGAAAGCAAGAAAACAG 359
consensus_5634#1      CACCGCGTTCCAACGAGCAGGCAGCGCACCCCAAGACAATTGGGGAAAGCAAGAAAACAG 324
                      *********************************** ************************

consensus_5634#0      GCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAA 419
consensus_5634#1      GCAGAAGGCGAAACCAAATCGAACAGTTTTAACGCATCGTCTTTGGGAGAGATCGCTTAA 384
                      ************************************************************

consensus_5634#0      GGATCATGGGTTAGACACTATCGTTTCCAATGCTGCTTCGATGTCTAGATAATCTTTCAA 479
consensus_5634#1      GGATCATGGGTTAGAAACTGTCGTTTCCAATGCTGCTTCGATGTCTAGATAATCTTTCAA 444
                      *************** *** ****************************************

consensus_5634#0      AATTTTAGCTACGCTTCGTTAGGTTGAAGTTGTTTCCCCACATCCAAACAAAAAGCCCTG 539
consensus_5634#1      AATTTTAGCTACGCTTCG------------------------------------------ 462
                      ******************                                          

consensus_5634#0      TAGAAGTAATTGTAAAAGATTCAAGCGCTATAGCGTAGTTTAAATTTTGAGAACAGCCAG 599
consensus_5634#1      ------------------------------------------------------------
                                                                                  

consensus_5634#0      TAGCCTTCCTAGTACTTGGCATCTTGGAACGTATGGAACGTAAGCACAGGACACAGGTCA 659
consensus_5634#1      ------------------------------------------------------------
                                                                                  

consensus_5634#0      GANGTTAGATNTTTATATTAATAGATATNTTTATCGAGCATGCTGTTGTATCATTTCAAC 719
consensus_5634#1      ------------------------------------------------------------
                                                                                  

consensus_5634#0      GTT 722
consensus_5634#1      ---