cluster # 568

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Anopheles gambiae
cluster # 568 cluster # 568 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_568#0 length = 657 sequences # 1

consensus_568#1 length = 574 sequences # 1

consensusID : consensus_568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCTTTTCTATCTCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAACGCCCTCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAAGAAGAAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTAGTGTTGCCCCCCACATCCCTGGGGATGACCTGTACCGCACCAGGAACCGAATCGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCTTTTCCACCAGCAGC]

[+] EMBL BM621468             [CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCTTTTCTATCTCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAACGCCCTCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAAGAAGAAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTAGTGTTGCCCCCCACATCCCTGGGGATGACCTGTACCGCACCAGGAACCGAATCGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCTTTTCCACCAGCAGC]




>consensus_568#0
CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGC
TCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTC
CCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCTTTTCTATCTCTCTGTA
CTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAACGCCCTCCCCTTACCT
CCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAAGAAG
AAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCC
CTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGA
CGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTAT
TCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCA
GTGTTTTAGTGTTGCCCCCCACATCCCTGGGGATGACCTGTACCGCACCAGGAACCGAAT
CGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCTTTTCCACCAGCAGC

consensusID : consensus_568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGTTTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAACGCCCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAGAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC]

[+] EMBL BM639055             [CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCGCTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAGGTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGTTTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAACGCCCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGATCGAAAAAAGAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCTTCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGTTTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC]




>consensus_568#1
CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCG
CTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAG
GTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGT
TTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAA
CGCCCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTAGA
TCGAAAAAAGAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCTTCC
TCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACTTAA
CTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGGTCT
TCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGACGGT
TTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_568#0      ----------------CCGAAAGCACACAGATGCTGGCCTCAGGATTTGCCGTAGTAGCG 44
consensus_568#1      CCGCCCACGCGTCCGCCCACGCGTCCGCAGATGCTGGCCTCAGGATTTGCCGTAGTAGCG 60
                                     **    *  * *********************************

consensus_568#0      CTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAG 104
consensus_568#1      CTCAATGCCTTGGAGCTCGGGACAGGAGTCTCCGCTAGTTAGATAATCAGTGGTGTCAAG 120
                     ************************************************************

consensus_568#0      GTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTCT 164
consensus_568#1      GTCAGGTAATCGATTCCCCAGGCTCGTCAGTTTGCCATAACGCTTCCGGATGTGTGTTGT 180
                     ********************************************************** *

consensus_568#0      TTTCTATCTCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAAATCCAAGTCACAA 224
consensus_568#1      TTTCTATCGCTCTGTACTTAACTTTACTTTAAAAATAGGGTTAGGAGTTCCAAGTCACAA 240
                     ******** *************************************  ************

consensus_568#0      CGCCCTCCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTA 284
consensus_568#1      CGCC--CCCCTTACCTCCAATGTGTATCGTGCGAGAACTCACAGTAGTAAGCAGTCACTA 298
                     ****  ******************************************************

consensus_568#0      GATCGAAAAAAAGAAGAAGACCAGAACAGAGTTATTCCGAATTTCAGTATCAGCACATCT 344
consensus_568#1      GATCGAAAAAA-GAAGAAGACCAGAACAGAGTTATTCCAAATTTCAGTATCAGCACATCT 357
                     *********** ************************** *********************

consensus_568#0      TCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACT 404
consensus_568#1      TCCTCCTTCCCCTTCCCTTTATTTGAATTAAAATGTGATAATAGCGTAGATATATTAACT 417
                     ************************************************************

consensus_568#0      TAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGG 464
consensus_568#1      TAACTTATCCTTTAGACGCGTAAGTCACCGCCACTGTGGTCTTCGCCCGCACAGCCGTGG 477
                     ************************************************************

consensus_568#0      TCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGAC 524
consensus_568#1      TCTTCGCCCGCTGTATTCTGGGGGCGCCCTCCGTCCTTCTGCCGGTAGGAGTGCCCGGAC 537
                     ************************************************************

consensus_568#0      GGTTTTGCTCAAGTCAGTGTTTT-AGTGTTGCCCCCCACATCCCTGGGGATGACCTGTAC 583
consensus_568#1      GGTTTTGCTCAAGTCAGTGTTTTTAGTGTTGTCCTCC----------------------- 574
                     *********************** ******* ** **                       

consensus_568#0      CGCACCAGGAACCGAATCGATTACATCGATAAGCAGTTTGTGTAATAAATGTATTCCTCT 643
consensus_568#1      ------------------------------------------------------------
                                                                                 

consensus_568#0      TTTCCACCAGCAGC 657
consensus_568#1      --------------