cluster # 5686

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Anopheles gambiae
cluster # 5686 cluster # 5686 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5686#0 length = 922 sequences # 2

consensus_5686#1 length = 661 sequences # 2

consensusID : consensus_5686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 922
fasta sequence

                              [TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACAACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGTATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCACAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTGCTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCACACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAATCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTG----TGTGTGTCTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCACATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAAGTATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCGCCATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCACACACACTCTCTCTCTCTCTCACACAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGG]

[+] EMBL CNS09QCF             [TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACAACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGTATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCACAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTGCTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCACACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAATCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTG    TGTGTGTCTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCACATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAAGT                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BM626864             [                                                                                                                                                                                                                                                                                                                                                                               TTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTGTGTATGTGTGTGTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCACATTAACCGATGTTCCACCGCGAAAATAAGACCCCCACAGAATATGGGAGTTTTGGAAAGTATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCGCCATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCACACACACTCTCTCTCTCTCTCACACAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGG]




>consensus_5686#0
TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACA
ACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGT
ATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCA
CAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTG
CTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCAC
ACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAA
TCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTGTGTGTGT
CTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCAC
ATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAAGT
ATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCGCC
ATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTA
TTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTT
GCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTCGC
GTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCACA
CACACTCTCTCTCTCTCTCACACAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCCGG

consensusID : consensus_5686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 661
fasta sequence

                              [CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAAACGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGTGTGTGTGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGCACACTAACCGATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAAGTAAGAGAGGGAGGAGCGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTTGTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTCCCTACACTCTCTCTCACACACACACACACACACGAAGTGCACCGTGTCCGACTACTTACTTACCCGCGGGTACTATACAGTTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCCGGCTTTTCCGCCTTCACGACG]

[+] EMBL BM594395             [CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAAACGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGTGTGTGTGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGCACACTAACCGATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAAGTAAGAGAGGGAGGAGCGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTTGTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTCCCTACACTCTCTCTCACACACACACACACACACGAAGTGCACCGTGTCCGACTACTTACTTACCCGCGGGTACTATACAGTTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCCGGCTTTTCCGCCTTCACGACG]
[-] EMBL BM630115             [                                                                                                                                                                                                                                                              CTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTTGTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCG                                                                                                                                                                                                                                 ]




>consensus_5686#1
CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAAACGCT
TCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGTGTGTG
TGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGCACACTAACC
GATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAAGTAAGAGAG
GGAGGAGCGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTT
GTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTT
CGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTT
GCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACT
GGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTCCCTACACTCTCTCTCACACA
CACACACACACACGAAGTGCACCGTGTCCGACTACTTACTTACCCGCGGGTACTATACAG
TTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCCGGCTTTTCCGCCTTCACGAC
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5686#0      TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACA 60
consensus_5686#1      ------------------------------------------------------------
                                                                                  

consensus_5686#0      ACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGT 120
consensus_5686#1      ------------------------------------------------------------
                                                                                  

consensus_5686#0      ATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCA 180
consensus_5686#1      ------------------------------------------------------------
                                                                                  

consensus_5686#0      CAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTG 240
consensus_5686#1      ------------------------------------------------------------
                                                                                  

consensus_5686#0      CTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCAC 300
consensus_5686#1      ------------------------------------------------------------
                                                                                  

consensus_5686#0      ACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAA 360
consensus_5686#1      -----CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAA 55
                           *   *    *  *  ******************************** *******

consensus_5686#0      TCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTGTGTGTGT 420
consensus_5686#1      ACGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGT 115
                       **************************************** * ****** *********

consensus_5686#0      CTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAA-TATAA-AAAAAGGAAAACAGC 478
consensus_5686#1      ----GTGTGTGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGC 171
                          ***** ********************* ****** ***** ***************

consensus_5686#0      ACATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAA 538
consensus_5686#1      ACACTAACCGATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAA 231
                      *** ********************** *** *  **************** *********

consensus_5686#0      GTATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCG 598
consensus_5686#1      GTAAGAGAGGGAGGAG-CGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCG 290
                      *** ************ **************************** **************

consensus_5686#0      CCATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAG 658
consensus_5686#1      CAATGTGTTTGTGTGT---------TTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAG 341
                      * ****** *******         ***********************************

consensus_5686#0      TATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATT 718
consensus_5686#1      TATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATT 401
                      ************************************************************

consensus_5686#0      TTGCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTC 778
consensus_5686#1      TTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTC 461
                      *********** *** *** ******* **** ********  *****************

consensus_5686#0      GCGTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCA 838
consensus_5686#1      GCGTCCCATGTTCCTGACTGGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTC- 520
                      ********************** ********************* ***** ***** ** 

consensus_5686#0      CACACACTCTCTCTCTCTCTCACACAAACTCTCT---CTCTCTCTCTCTCTCT-CTCTCT 894
consensus_5686#1      CCTACACTCTCTCTCACACACACACACACACACGAAGTGCACCGTGTCCGACTACTTACT 580
                      *  ************ * * ****** ** * *      * *  * **   ** **  **

consensus_5686#0      CTCTCTCTCTCTCTCT-CTCTCTCTCCGG------------------------------- 922
consensus_5686#1      TACCCGCGGGTACTATACAGTTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCC 640
                        * * *     ** * *  *  ****                                 

consensus_5686#0      ---------------------
consensus_5686#1      GGCTTTTCCGCCTTCACGACG 661