cluster # 5690

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Anopheles gambiae
cluster # 5690 cluster # 5690 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5690#0 length = 700 sequences # 1

consensus_5690#1 length = 664 sequences # 3

consensusID : consensus_5690#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [CCGCCCACGCGTCCGGTGGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGATTCATTGTTCTAGTACTAGTACGTGTCTGAAGAAAAAAACCGTCTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCAGCAATCGTGAATCGTGTGGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATTGCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTTCCAGGACGCTTTGCTGCCCAGTGCTGGCACCGAAACACGAATTTTCGTTACTTCACCCCACAAGCTGCGATTGTGAGTGCAGAAATGGGCAATTGAGCCGATGGCGTGGTCCTCATTAAGGGCGATATCGATTAAGCTATATTAACAAATATTAATCAC]

[+] EMBL BM594711             [CCGCCCACGCGTCCGGTGGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGATTCATTGTTCTAGTACTAGTACGTGTCTGAAGAAAAAAACCGTCTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCAGCAATCGTGAATCGTGTGGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATTGCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTTCCAGGACGCTTTGCTGCCCAGTGCTGGCACCGAAACACGAATTTTCGTTACTTCACCCCACAAGCTGCGATTGTGAGTGCAGAAATGGGCAATTGAGCCGATGGCGTGGTCCTCATTAAGGGCGATATCGATTAAGCTATATTAACAAATATTAATCAC]




>consensus_5690#0
CCGCCCACGCGTCCGGTGGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAG
CCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGT
AACGAGGCTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCT
GTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAA
CCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGAC
GACAACGCGGCTATCGATTCATTGTTCTAGTACTAGTACGTGTCTGAAGAAAAAAACCGT
CTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGG
TCAGCTTCTTATCAGCAATCGTGAATCGTGTGGAGAGTTAGAGTCAAGCGAACGCGCGAA
ACCAAATCGACATTGCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGT
TCCAGGACGCTTTGCTGCCCAGTGCTGGCACCGAAACACGAATTTTCGTTACTTCACCCC
ACAAGCTGCGATTGTGAGTGCAGAAATGGGCAATTGAGCCGATGGCGTGGTCCTCATTAA
GGGCGATATCGATTAAGCTATATTAACAAATATTAATCAC

consensusID : consensus_5690#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 664
fasta sequence

                              [CCGTTCATTTGTGGCAGTTGAGGTGTTAGTGGAGCTGTCCAGACGCGATACTACTACTCCAGGGCAGTGATTCAGCCAGCGAGGTGAACTTCTGCTTCGATTGAGTGC-GTGCATTTTCGTGGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGATTCATTGTTCTAGTACTAGTACGTGTCTGAAAGAAGAAAAAACAGTCTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCAGCAATCGTGAATCGTGT-GGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATTGCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTCGCAGGACGCTTTGCTGC]

[+] EMBL BM604772             [CCGTTCATTTGTGGCAGTTGAGGTGTCAGTGGAGCTATCCAGACGCGATACTACTACTCCAGGGCAGTGATTCAGCCAGCGAGGTGAACTTCTGCTTCGATTGAGTGCGGTGCATTTTCATGGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGATTCATTGTTCTAGTACTAGTATGTGTCTGAACGATGAAAAAACAGTCTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTTTGTTTAGTCAATGGTCAGCTTCTTATCAGCAATCGTGAATCGTGT GGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATTGCGACACCGTTTGGCAG                                               ]
[+] EMBL BM604987             [   ccgATTTGTGGCAGTTGAGGTGTTAGTCGAGCTGTCCGGACGCGATACTACTACTCCAGGGCAGTGATTCAGCCAGCGAGGTGAACTTCTGCTTCGATTGAGTGC AAGCATTTTCGTGGAAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGTTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGTCGGGATGCGAACCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAAAGTGCAGGGACAACAACACGGCTATCGATTCATTGTTCTAGTACTAGTACGTGTCTGAAAGAAGAAAAAACAGTCTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCAGCAATCGTGAATCGTGT GGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATTGCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTCGCAGGACGCTTTGCTGC]
[+] EMBL BM648751             [         ccgGGCAGTTGAGGTGTTAGTTGAGCTGTCCAGACGCGATACTACTACTCCAGGGCAGTGATTCAGCCAGCGAGGTGAACTTCTGCTTCGATTGAGTGC GTGAATTTTCGTGGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCGATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACGAAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGTGCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACTGTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGATTCATTGTTCTAGTACTAGTACGTGTCTGAAAGAAGAAAAAACCGTCTACATTCTTGTACTGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCAGCAATCGTGAATCGTGTGGGAGAGTTAGAGTCAAGCGAACGCGCGAAAC                                                                            ]




>consensus_5690#1
CCGTTCATTTGTGGCAGTTGAGGTGTTAGTGGAGCTGTCCAGACGCGATACTACTACTCC
AGGGCAGTGATTCAGCCAGCGAGGTGAACTTCTGCTTCGATTGAGTGCGTGCATTTTCGT
GGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCG
ATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACG
AAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGT
GCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACT
GTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGA
TTCATTGTTCTAGTACTAGTACGTGTCTGAAAGAAGAAAAAACAGTCTACATTCTTGTAC
TGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCA
GCAATCGTGAATCGTGTGGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATT
GCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTCGCAGGACGCTTTG
CTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5690#0      ------------------------------------------------------------
consensus_5690#1      CCGTTCATTTGTGGCAGTTGAGGTGTTAGTGGAGCTGTCCAGACGCGATACTACTACTCC 60
                                                                                  

consensus_5690#0      ------------------------------------------CCGCCCACGCGTCCG-GT 17
consensus_5690#1      AGGGCAGTGATTCAGCCAGCGAGGTGAACTTCTGCTTCGATTGAGTGCGTGCATTTTCGT 120
                                                                  *  *  ** *    **

consensus_5690#0      GGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCG 77
consensus_5690#1      GGGAAAGCGACAACATAATGGAGACCACCGTGATCGTTACCAGCCCGAATGTTGGCCCCG 180
                      ************************************************************

consensus_5690#0      ATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACG 137
consensus_5690#1      ATCCGACCACCATCATCTGTCCGTCCTGCCGGGCGACGGTGGTAACGAGGCTGGAGTACG 240
                      ************************************************************

consensus_5690#0      AAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGT 197
consensus_5690#1      AAACGACCACCAAGACGCATCTGTGTGCCGGGCTGCTGTGCCTGTTCCTGTGCTGGCCGT 300
                      ************************************************************

consensus_5690#0      GCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACT 257
consensus_5690#1      GCGCCTTCGTGCCGTACTGCTCCACGTCCTGCCGGGATGCGAACCATTACTGCCCGAACT 360
                      ************************************************************

consensus_5690#0      GTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGA 317
consensus_5690#1      GTGGTTCGTTCATTGGCACGTATCGGAAGTAGAGTGCAGGGACGACAACGCGGCTATCGA 420
                      ************************************************************

consensus_5690#0      TTCATTGTTCTAGTACTAGTACGTGTCTGAAGAAA---AAAACCGTCTACATTCTTGTAC 374
consensus_5690#1      TTCATTGTTCTAGTACTAGTACGTGTCTGAAAGAAGAAAAAACAGTCTACATTCTTGTAC 480
                      *******************************  **   ***** ****************

consensus_5690#0      TGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCA 434
consensus_5690#1      TGCTAGTGTTTATGTGTGCGTGTGTATGAGTGTGTTTAGTCAATGGTCAGCTTCTTATCA 540
                      ************************************************************

consensus_5690#0      GCAATCGTGAATCGTGTGGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATT 494
consensus_5690#1      GCAATCGTGAATCGTGTGGAGAGTTAGAGTCAAGCGAACGCGCGAAACCAAATCGACATT 600
                      ************************************************************

consensus_5690#0      GCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTTCCAGGACGCTTTG 554
consensus_5690#1      GCGACACCGTTTGGCAGATAAGATAGGGAGCCGTTTATCGACGAGTCGCAGGACGCTTTG 660
                      **********************************************  ************

consensus_5690#0      CTGCCCAGTGCTGGCACCGAAACACGAATTTTCGTTACTTCACCCCACAAGCTGCGATTG 614
consensus_5690#1      CTGC-------------------------------------------------------- 664
                      ****                                                        

consensus_5690#0      TGAGTGCAGAAATGGGCAATTGAGCCGATGGCGTGGTCCTCATTAAGGGCGATATCGATT 674
consensus_5690#1      ------------------------------------------------------------
                                                                                  

consensus_5690#0      AAGCTATATTAACAAATATTAATCAC 700
consensus_5690#1      --------------------------