cluster # 5701

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Anopheles gambiae
cluster # 5701 cluster # 5701 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5701#0 length = 962 sequences # 3

consensus_5701#1 length = 659 sequences # 1

consensusID : consensus_5701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 962
fasta sequence

                              [CCGCTTAGCTTTTCCTCTCCTAACGTTTGCATGACGCCTGTCAGCGGTCAGTGAGTGTGGAGCACGGGCTGTTGCAGCAGGTGCCTAGTGATATTGTGGAAAACGGCCCGACCAGGGGGGAAAGGAATCGTAACTAACCTATGGGAAGTTTTCTGTGGTGCTAACCGTTGTACGAAAATCAGCGAAGAATAACAAACAAAAAATGAAAACATTCCACATATGTGATCACAGTGAACGAAAGTGATTAAAAATCATCGACTTTCGACGTTGTTCGAAGTAAAAAAAAGAAAGAGCGACGAGGAGCAACAGCCAAGTGTGCAACGAGATTACAAAACTCGATCAGAATAGAAAAGTGAGGGTGATAGCAACACTACTTCTCTCCAAAGCCAAAGTGAGATCGTTTGCTGCGTGAAGTGATATTCCATCTTTATTAACAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCGCGGAGCTGTCCCAATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAGCCGAGGTAGACCGG-AAGCTGAAGGAGATAGGAGCCGCCACGCCCATCCTGCCGTCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGGTCGGCTTTCTGTTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGATACTGTGACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTGTCACGATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGAGGATCAT]

[+] EMBL BM647019             [CCGCTTAGCTTTTCCTCTCCTAACGTTTGCATGACGCCTGTCAGCGGTCAGTGAGTGTGGAGCACGGGCTGTTGCAGCAGGTGCCTAGTGATATTGTGGAAAACGGCCCGACCAGGGGGGAAAGGAATCGTAACTAACCTATGGGAAGTTTTCTGTGGTGCTAACCGTTGTACGAAAATCAGCGAAGAATAACAAACAAAAAATGAAAACATTCCACATATGTGATCACAGTGAACGAAAGTGATTAAAAATCATCGACTTTCGACGTTGTTCGAAGTAAAAAAAAGAAAGAGCGACGAGGAGCAACAGCCAAGTGTGCAACGAGATTACAAAACTCGATCAGAATAGAAAAGTGAGGGTGATAGCAACACTACTTCTCTCCAAAGCCAAAGTGAGATCGTTTGCTGCGTGAAGTGATATTCCATCTTTATTAACAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCGCGGAGCTGTCCCAATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAGCCGAGGTAGACCGGAAAGCTGAAGGAGATAGG                                                                                                                                                                                                                                                                        ]
[+] EMBL BM607465             [                               ccgCGCCTGTCAGCGGTCAGTGAGTGTGGAGCACGGGCTGTTGCAGCAGGTGCCTAGTGATATTGTGGAAAACGGCCCGACCAGGGGGGAAAGGAATCGTAACTAACCTATGGGAAGTTTTCTGTGGTGCTAACCGTTGTACGAAAATCAGCGAAGAATAACAAACAAAAAATGAAAACATTCCACATATGTGATCACAGTGAACGAAAGTGATTAAAAATCATCGACTTTCGACGTTGTTCGAAGTAAAAAAAAGAAAGAGCGACGAGGAGCAACAGCCAAGTGTGCAACGAGATTACAAAACTCGATCAGAATAGAAAAGTGAGGGTGATAGCAACACTACTTCTCTCCAAAGCCAAAGTGAGATCGTTTGCTGCGTGAAGTGATATTCCATCTTTATTAACAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCGCGGAGCTGTCCCAATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAGCCGAGGTAGACCGG AAGCTGAAGGAGATAGGAGCCGCCACGCCC                                                                                                                                                                                                                                                           ]
[+] EMBL BM632167             [                                                                                                                                                                                                                                                                                                                                                                        ccgAGCAACACTACTTCTCTCCAAAGCCAAAGTGAGATCGTTTGCTGCGTGAAGTGATATTCCATCTTTATTAACAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCGCGGAGCTGTCCCAATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAGCCGAGGTAGACCGG AAGCTGAAGGAGATAGGAGCCGCCACGCCCATCCTGCCGTCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGGTCGGCTTTCTGTTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGATACTGTGACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTGTCACGATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGAGGATCAT]




>consensus_5701#0
CCGCTTAGCTTTTCCTCTCCTAACGTTTGCATGACGCCTGTCAGCGGTCAGTGAGTGTGG
AGCACGGGCTGTTGCAGCAGGTGCCTAGTGATATTGTGGAAAACGGCCCGACCAGGGGGG
AAAGGAATCGTAACTAACCTATGGGAAGTTTTCTGTGGTGCTAACCGTTGTACGAAAATC
AGCGAAGAATAACAAACAAAAAATGAAAACATTCCACATATGTGATCACAGTGAACGAAA
GTGATTAAAAATCATCGACTTTCGACGTTGTTCGAAGTAAAAAAAAGAAAGAGCGACGAG
GAGCAACAGCCAAGTGTGCAACGAGATTACAAAACTCGATCAGAATAGAAAAGTGAGGGT
GATAGCAACACTACTTCTCTCCAAAGCCAAAGTGAGATCGTTTGCTGCGTGAAGTGATAT
TCCATCTTTATTAACAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGC
GCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAG
ACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCGCGGAGCTGTCCCAATCA
GACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTG
CACGAAGCCGAGGTAGACCGGAAGCTGAAGGAGATAGGAGCCGCCACGCCCATCCTGCCG
TCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGGTCGGC
TTTCTGTTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGATACTGT
GACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTGTCACG
ATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGAGGATC
AT

consensusID : consensus_5701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CCGCTATTTACCCTTTGGCAAAGCAAATGTGTCCGTCTGTTTGATGTGTGTTAAAAGAACGTGTTAAGGTTTCGCCAACGGGATCGCCAACGCCCGCTAACGCCCTCTTGCCTGTGAATCAACACGAAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCCGCGGAGCTGTCCCAATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAGCCGAGGTAGACCGGAAGCTGAAGGAGATAGGAGCCGCCACGCCCATCCTGCCGTCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGGTCGGCTTTCTGCTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGATACTGTGACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTGTCACGATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGAGGATCATCCCT]

[+] EMBL BM596130             [CCGCTATTTACCCTTTGGCAAAGCAAATGTGTCCGTCTGTTTGATGTGTGTTAAAAGAACGTGTTAAGGTTTCGCCAACGGGATCGCCAACGCCCGCTAACGCCCTCTTGCCTGTGAATCAACACGAAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCCGCGGAGCTGTCCCAATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAGCCGAGGTAGACCGGAAGCTGAAGGAGATAGGAGCCGCCACGCCCATCCTGCCGTCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGGTCGGCTTTCTGCTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGATACTGTGACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTGTCACGATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGAGGATCATCCCT]




>consensus_5701#1
CCGCTATTTACCCTTTGGCAAAGCAAATGTGTCCGTCTGTTTGATGTGTGTTAAAAGAAC
GTGTTAAGGTTTCGCCAACGGGATCGCCAACGCCCGCTAACGCCCTCTTGCCTGTGAATC
AACACGAAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTTGTGCGCAAAAAC
GCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATCACAGACTGATCC
GCACCATCGTGCACCGACGGCCGAAAGCCTTGCCCGCGGAGCTGTCCCAATCAGACTCGA
CCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACGTGGTGCACGAAG
CCGAGGTAGACCGGAAGCTGAAGGAGATAGGAGCCGCCACGCCCATCCTGCCGTCGGAGA
TCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGGTCGGCTTTCTGC
TGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGATACTGTGACTATC
GTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTGTCACGATGGGTG
CACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGAGGATCATCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5701#0      CCGCTTAGCTTTTCCTCTCCTAACGTTTGCATGACGCCTGTCAGCGGTCAGTGAGTGTGG 60
consensus_5701#1      ------------------------------------------------------------
                                                                                  

consensus_5701#0      AGCACGGGCTGTTGCAGCAGGTGCCTAGTGATATTGTGGAAAACGGCCCGACCAGGGGGG 120
consensus_5701#1      ------------------------------------------------------------
                                                                                  

consensus_5701#0      AAAGGAATCGTAACTAACCTATGGGAAGTTTTCTGTGGTGCTAACCGTTGTACGAAAATC 180
consensus_5701#1      ------------------------------------------------------------
                                                                                  

consensus_5701#0      AGCGAAGAATAACAAACAAAAAATGAAAACATTCCACATATGTGATCACAGTGAACGAAA 240
consensus_5701#1      ------------------------------------------------------------
                                                                                  

consensus_5701#0      GTGATTAAAAATCATCGACTTTCGACGTTGTTCGAAGTAAAAAAAAGAAAGAGCGACGAG 300
consensus_5701#1      ------------------------------------------------------------
                                                                                  

consensus_5701#0      GAGCAACAGCCAAGTGTGCAACGAGATTACAAAACTCGATCAGAATAGAAAAGTGAGGGT 360
consensus_5701#1      ------CCGCTATTTACCCTTTGGCAAAGCAAA--TGTGTCCGTCTGTTTGA-TGTGTGT 51
                            * ** *  *   *   *  *   ****  *   ** *  *     * ** * **

consensus_5701#0      GATAGCAACACTACTTCTCTCCAAAGCCAAAGTGAGATCGTTTGCTGCGTGAAGTGATAT 420
consensus_5701#1      TAAAAGAACGTGTTAAGGTTTC---GCCAACGGGATCGCCAACGCCCGCTAACGCCCTCT 108
                       * *  ***          * *   ***** * **   *    **    * * *   * *

consensus_5701#0      TCCATCTTTATTAACA----GCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTT 476
consensus_5701#1      TGCCTGTGAATCAACACGAAGCCTTACAATGGGAGCCGACTCGCAGACGAAAACGATTTT 168
                      * * * *  ** ****    ****************************************

consensus_5701#0      GTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATC 536
consensus_5701#1      GTGCGCAAAAACGCCCGAACTGATCGAGACGGCAATCGCCGACCGAAAGCCAGAACAATC 228
                      ************************************************************

consensus_5701#0      ACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCC-GCGGAGCTGTCCC 595
consensus_5701#1      ACAGACTGATCCGCACCATCGTGCACCGACGGCCGAAAGCCTTGCCCGCGGAGCTGTCCC 288
                      ********************************************** *************

consensus_5701#0      AATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACG 655
consensus_5701#1      AATCAGACTCGACCCTTTCCGGGGTCCAGTTTGAGAAGGCGCTGCAAACCTGCAGCAACG 348
                      ************************************************************

consensus_5701#0      TGGTGCACGAAGCCGAGGTAGACCGGAAGCTGAAGGAGATAGGAGCCGCCACGCCCATCC 715
consensus_5701#1      TGGTGCACGAAGCCGAGGTAGACCGGAAGCTGAAGGAGATAGGAGCCGCCACGCCCATCC 408
                      ************************************************************

consensus_5701#0      TGCCGTCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGG 775
consensus_5701#1      TGCCGTCGGAGATCGGGACGGATTTTAACTTCAAGCGGGAAATCGTTTGGAAAAATGTGG 468
                      ************************************************************

consensus_5701#0      TCGGCTTTCTGTTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGAT 835
consensus_5701#1      TCGGCTTTCTGCTGCTTCACATCTGCGGCTGGGTTGGATTACATCTGGCTTTCTGGCGAT 528
                      *********** ************************************************

consensus_5701#0      ACTGTGACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTG 895
consensus_5701#1      ACTGTGACTATCGTACGACGCTATACACACTTTGGCTGATGTACGCCTCTGGACAGGGTG 588
                      ************************************************************

consensus_5701#0      TCACGATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGA 955
consensus_5701#1      TCACGATGGGTGCACATCGACTCTGGTCTCACCGGGCGTTCAAGGCGAAGCTCTGGCTGA 648
                      ************************************************************

consensus_5701#0      GGATCAT---- 962
consensus_5701#1      GGATCATCCCT 659
                      *******