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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 956 fasta sequence
[CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT]
[+] EMBL BM598119 [CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAAT ]
[+] EMBL BX626511 [ TTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT]
[+] EMBL BX613954 [ GGAAAAGAGAGGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACGATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTC ]
consensusID : consensus_5719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA]
[+] EMBL BX616564 [GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5719#0 -----------------------------------------------CCGCGAGAGTGGC 13
consensus_5719#1 GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGC 60
* **********
consensus_5719#0 CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG 73
consensus_5719#1 CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG 120
************************************************************
consensus_5719#0 GCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCG 133
consensus_5719#1 GCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCG 180
***************************** ******************************
consensus_5719#0 TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGT 193
consensus_5719#1 TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGG---------- 230
**************************************************
consensus_5719#0 TCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGAT 253
consensus_5719#1 ----------------------------------------------------GCGAAGAT 238
********
consensus_5719#0 ATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCC 313
consensus_5719#1 ATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCC 298
************************************************************
consensus_5719#0 AACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGA 373
consensus_5719#1 AACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGA 358
************************************************************
consensus_5719#0 AACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCAT 433
consensus_5719#1 AACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCAT 418
************************************************************
consensus_5719#0 CCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGA 493
consensus_5719#1 CCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGA 478
************************************************************
consensus_5719#0 TGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGA 553
consensus_5719#1 TGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA--------- 529
***************************************************
consensus_5719#0 CCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCA 613
consensus_5719#1 ------------------------------------------------------------
consensus_5719#0 GATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACC 673
consensus_5719#1 ------------------------------------------------------------
consensus_5719#0 AACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAA 733
consensus_5719#1 ------------------------------------------------------------
consensus_5719#0 CAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTC 793
consensus_5719#1 ------------------------------------------------------------
consensus_5719#0 CCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAA 853
consensus_5719#1 ------------------------------------------------------------
consensus_5719#0 ATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGG 913
consensus_5719#1 ------------------------------------------------------------
consensus_5719#0 GNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT 956
consensus_5719#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||