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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence
[CCGCGGACGCGTGGGCGG-ACGCGTGG-GCGACAGTGGCCAGTGATG-GGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTT-ACGGCGAAGCTGCAG-TACCTGAAGGACAC-GGGCATCGATGCGACGTGGCT-GAGTCCGATCTTTAG-CTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC-GCCGATCTGGAGCAAC-TGTTTGCGGAGGCGAACAA-GCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCA-CCAGT-GGTTCATCGATTC-GGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNGGTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNCGGAA]
[+] EMBL BM598477 [CCGCGGACGCGTGGGCGG ACGCGTGG GCGACAGTGGCCAGTGATG GGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTT ACGGCGAAGCTGCAG TACCTGAAGGACAC GGGCATCGATGCGACGTGGCT GAGTCCGATCTTTAG CTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC GCCGATCTGGAGCAAC TGTTTGCGGAGGCGAACAA GCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCA CCAGT GGTTCATCGATTC GGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATG ]
[+] EMBL BX467549 [ gcaagaatCGGCACG NTGGCACGACAGTGG CAGTGATGNNGTGCGCGTTGGAATTTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCTCAACCCGCCGACAAAGAGTGGTGGGAAACGG CCTGTTCTACCAGATCTATCCCCGGTCCTTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTAACGGCGAAGCTGCAGTTACCTGAAGGACACGGGGCATCGATGCGACGTGGCTAGAGTCCGATCTTTAGACTCGCCGCAGGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGGCCGATCTGGAGCAACGTGTTTGCGGAGGCGAACAAGGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAAGCATACGAGCAACAAGCAGCCAGTGGGTTCATCGATTCGGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCGCAGGAATGTGCANATGGGCAGCNGGTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGGGGCTCNGGGCTTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGCAACCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAAAGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAATNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGGGGAGCCGGCCAGGNNTGGACTGGAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTGTTTNCGGAA]
consensusID : consensus_5720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence
[CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTGCACCAGTTCGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTGG]
[+] EMBL CNS09BJ1 [CGGGGTGGGAGATGTGCGGGGCTTACGGCGAACTGCAGTACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAGAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAACGCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGACTTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCACCGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAGCTGGGCGTCATGTACTATCTG ]
[-] EMBL CNS09BJ2 [ ACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATTGCAACGTACCGGGACTATTACGTATGGCGCCCGGCCAGGAATGTGAATGGGCAGCGTATGCCACCGAACAATTGGCAATCGGTGTTTTACGGCTCGGCTTGGGAGTGGAGCGAAGTGCGCGGCGAGTACTATCTGCACCAGTTCGCCAAAGGCCAGCCCGATCTGAACTATCGCAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTGGATGGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAGCATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGGCTACACGCACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5720#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGACAGTGGCCAGTGATGGGTGCGCGTTGGAAT 60
consensus_5720#1 ------------------------------------------------------------
consensus_5720#0 TTAGCATTGCTCGGGCTAGTGCTTGTCGCCGCCGGTTGTACCGTGCGGTCGCAGGAAGCT 120
consensus_5720#1 ------------------------------------------------------------
consensus_5720#0 CAACCCGCCGACAAAGAGTGGTGGGAAACGGCCCTGTTCTACCAGATCTATCCCCGCTCC 180
consensus_5720#1 ------------------------------------------------------------
consensus_5720#0 TTCTACGACACGAACGACGACGGGGTGGGAGATGTGCGGGGCGTTACGGCGAAGCTGCAG 240
consensus_5720#1 --------------------CGGGGTGGGAGATGTGCGGGGC-TTACGGCGAA-CTGCAG 38
********************** ********** ******
consensus_5720#0 TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG 300
consensus_5720#1 TACCTGAAGGACACGGGCATCGATGCGACGTGGCTGAGTCCGATCTTTAGCTCGCCGCAG 98
************************************************************
consensus_5720#0 GAAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC 360
consensus_5720#1 -AAGACTTTGGGTACGATGTGTCGGATTTCAAGCAGGTCGATCCGTTGTTTGGCACGAAC 157
***********************************************************
consensus_5720#0 GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC 420
consensus_5720#1 GCCGATCTGGAGCAACTGTTTGCGGAGGCGAACAAGCTGGGGCTGAAGATAGTGCTGGAC 217
************************************************************
consensus_5720#0 TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT 480
consensus_5720#1 TTTGTGCCGAACCATACGAGCAACAAGCACCAGTGGTTCATCGATTCGGAGAAGGGAATT 277
************************************************************
consensus_5720#0 GCACCGTACCGGGACTATTACGTATGGCGCCCGGCCCAGGAATGTGAATGTGGGCAGCNG 540
consensus_5720#1 GCACCGTACCGGGACTATTACGTATGGCGCCCGGCC-AGGAATGTGAATG--GGCAGCG- 333
************************************ ************* ******
consensus_5720#0 GTATGCCANNCGGAACAANTGGGCAAATNCGGGGNGGTAGTTAACGGG--GGCTCNGGGC 598
consensus_5720#1 -TATGCCACC--GAACAATTGGC--AATC------GGTGTTTTACGGCTCGGCTTGGGAG 382
******* ****** *** *** *** ** **** **** **
consensus_5720#0 TTTTGGGANNTTGGGAACAGAAGCTTGCGCCGGGCGGAAGTTAACTAATACTNGGC--AA 656
consensus_5720#1 TGGAGCGAGCTGGGCGTCATGTACTATCT----GCACCAGTTCGCCAAAGGCCAGCCCGA 438
* * ** * ** ** ** * ** **** * ** ** *
consensus_5720#0 CCCAAGGTTCCGGCCNAAAAGGGCCAAGGCCNGAAAGTCTGGAACCTTATNACCGGGCAA 716
consensus_5720#1 TCTGAACTATCG---CAATCCGGCCGTGGTCGCCGAGTTCGACGATGTGCTGCGGTACTG 495
* * * ** ** **** ** * *** * * * * *
consensus_5720#0 AGTCCCNGGGGGCCCAGGATCGANTATCAGCGCGCCGGCAGGTTTTGCCGGACGCTCAAA 776
consensus_5720#1 GAT-----GGAGCGCGGTGCGGCTGGATTCCGGGTCGACGCGATCAACCACATGTTCGAG 550
* ** ** * * * ** * ** * * * ** * * ** *
consensus_5720#0 TNGATCGCGTTAGCNGAGGAGTAACTTTGGGAACTGG-GGAGCCGGCCAGGNNTGGACTG 835
consensus_5720#1 CATCCGGACTTTATCGACGAGCCGATCAACAATCCGGAGGATCCGAACAGCTACGG-CTA 609
* ** ** *** * * * ** *** *** *** ** **
consensus_5720#0 GAGTCTAGGCANTTTCCACGGGGGGGTTCCGAAACAGACGAATAGAAAANCACCANCNTG 895
consensus_5720#1 CACGC---ACCACATCTACACGAAGGATCTGCCGGAAACGTACGACGTGATCGCGCACTG 666
* * * ** ** * ** ** * * *** * * **
consensus_5720#0 TTTNCGGAA 904
consensus_5720#1 G-------- 667
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||