cluster # 5726

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5726 cluster # 5726 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5726#0 length = 624 sequences # 1
consensus_5726#1 length = 622 sequences # 1

consensus_5726#2 length = 477 sequences # 1
consensus_5726#3 length = 400 sequences # 1

consensusID : consensus_5726#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAACTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCAGGGGGCATTATTCAGGAACAAGGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGCAAGGTAAGGAAGGAGAACAGCGCGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAAT]

[+] EMBL BX614212             [CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAACTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCAGGGGGCATTATTCAGGAACAAGGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGCAAGGTAAGGAAGGAGAACAGCGCGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAAT]




>consensus_5726#0
CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAG
ACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGA
AAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCT
GCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAA
CTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCC
AGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGC
CAGCTTCTTCAGGGGGCATTATTCAGGAACAAGGAGAGAAGATAGCAACAGCATAGCAAT
AGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGA
TACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACC
AGGAAAAAAGGCTTTAGCAAGGTAAGGAAGGAGAACAGCGCGTAGAGAGATAACGGAATA
ACACAACAAAACCCTTGTGCTAAT

consensusID : consensus_5726#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAGAGTAATGTGAAGCCGAACCGAAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACGCCTTTACCATCGTTTCCCCGCCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCCATACGCAAGAGACACATATCGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGCGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCCTATGCCGGTTTGCTTTTCGTTTTTTTATTGTGACTTTATTTTGGCTTTTTAAAAAGTTGGTTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGTACGGCACGAAATGATTGTGATGTTATGGTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAGGAGGAGGAGGAGTANGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTCCACAAGTGAGCACGGTCGAC]

[+] EMBL BX620479             [AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAGAGTAATGTGAAGCCGAACCGAAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACGCCTTTACCATCGTTTCCCCGCCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCCATACGCAAGAGACACATATCGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGCGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCCTATGCCGGTTTGCTTTTCGTTTTTTTATTGTGACTTTATTTTGGCTTTTTAAAAAGTTGGTTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGTACGGCACGAAATGATTGTGATGTTATGGTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAGGAGGAGGAGGAGTANGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTCCACAAGTGAGCACGGTCGAC]




>consensus_5726#1
AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAGAGTAATGTGAAGCCGAACCG
AAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACGCCTTTACCATCGTTTCCCCG
CCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCCATACGCAAGAGACACATATC
GGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGCGATGAACGCACGTGTCC
GTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCCTATGCCGGTTTGCTTTTCGTTTT
TTTATTGTGACTTTATTTTGGCTTTTTAAAAAGTTGGTTTTCCTTCGATTAGAAGATCTT
TTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACG
GCTTCTGTGTACGGCACGAAATGATTGTGATGTTATGGTCTAAGTTTTATAGTGCGTACG
AAAGACACGACAGGCAAGCCAAGGAGGAGGAGGAGGAGGAGGAGTANGAGGAGGAAAGCT
AAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCC
TCCACAAGTGAGCACGGTCGAC

consensusID : consensus_5726#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAATAACGAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAAACGAAAGGAAAATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAGGCATGTGC]

[-] EMBL BX466640             [TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAATAACGAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAAACGAAAGGAAAATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAGGCATGTGC]




>consensus_5726#2
TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAG
ACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGC
TTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCATAGCAATAG
ATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATA
CATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAG
GAAAAAAGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAATAAC
GAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAAACGAAAGGAAA
ATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAGGCATGTGC

consensusID : consensus_5726#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [CCGGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGAGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCTTTGCCGTTTTGCTATCCGGTTTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGCTGATTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCC]

[+] EMBL BM599360             [CCGGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGAGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCTTTGCCGTTTTGCTATCCGGTTTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGCTGATTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCC]




>consensus_5726#3
CCGGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGAGATGAACGCACGTG
TCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCTTTGCCGTTTTGCTATCCGGT
TTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGCTGATTTTCCTTCGATTAGAA
GATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACA
CTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTG
CGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAAAGCTAAATCAATGGACCACAAA
GTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5726#1      ------------------------------------------------------------
consensus_5726#3      ------------------------------------------------------------
consensus_5726#0      CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAG 60
consensus_5726#2      ------------------------------------------------------------
                                                                                  

consensus_5726#1      --------------------AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAG 40
consensus_5726#3      ------------------------------------------------------------
consensus_5726#0      ACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGA 120
consensus_5726#2      ------------------------------------------------------------
                                                                                  

consensus_5726#1      AGTAATGTGAAGCCGAACCGAAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACG 100
consensus_5726#3      ------------------------------------------------------------
consensus_5726#0      AAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCT 180
consensus_5726#2      ------------------------------------------------------------
                                                                                  

consensus_5726#1      CCTTTACCATCGTTTCCCCGCCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCC 160
consensus_5726#3      ------------------------------------------------------------
consensus_5726#0      GCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAA 240
consensus_5726#2      ------------------------------------------------------------
                                                                                  

consensus_5726#1      ATACGCAAGAGACACATATCGGG-GCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCA 219
consensus_5726#3      -----------------CCGGGG-GCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCA 42
consensus_5726#0      CTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGG---CAAGCACA 297
consensus_5726#2      ----TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGG---CAAGCACA 53
                                          * * ** **     * *****     ***   *  ** **

consensus_5726#1      TCGCGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGAT-CAATCTCATTTTTCCT 278
consensus_5726#3      TCGAGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGAT-CAATCTCATTTTTCTT 101
consensus_5726#0      TCCAGAGACAGCCAAGT-TATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCAT 356
consensus_5726#2      TCCAGAGACAGCCAAGT-TATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCAT 112
                      **  **   *  ** ** *     *  ** *   * **  * * * *   *   *  * *

consensus_5726#1      ATGCCGGTTTGCTTTTCG----TTTTTTTATTGTGACTTTATTTTGGCTTTTTAAAAAGT 334
consensus_5726#3      -TGCCGTTTTGCTATCCGGTTTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGC 160
consensus_5726#0      CGGCCAGCTTCTTC-AGGGGGCATTATTCAGGAACAAG-GAGAGAAGATAGCAACAGCA- 413
consensus_5726#2      CGGCCAGCTTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCA- 171
                        ***   **  *    *     ** ** *     *          * *    * *    

consensus_5726#1      TGGTTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACG-GCACGG 393
consensus_5726#3      TGATTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACG-GCACGG 219
consensus_5726#0      TAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATAC 473
consensus_5726#2      TAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATAC 231
                      *     *   **   ***   ** *    **     **  * *    ** *     *   

consensus_5726#1      ACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGTACGGCACGAAATGATTGTGATGT 453
consensus_5726#3      ACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGT 279
consensus_5726#0      ATAAAGATACAT-AACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGAT 532
consensus_5726#2      ATAAAGATACAT-AACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGAT 290
                      * ***  * *** ** * * **  *  *     ***    *      *  * **  *  *

consensus_5726#1      TATGGTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAGG 513
consensus_5726#3      TATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGA-- 337
consensus_5726#0      GATGAACCAGGAAAAA-AGGCTTTAGCA---AGGTAAGGAAGGAGAACAGCG-----CGT 583
consensus_5726#2      GATGAACCAGGAAAAA-AGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTT 349
                       ***  * * *    * **    **  *   *    *      *    *           

consensus_5726#1      AGGAGGAGGAGTANGAGGAGGAAAGCTAA-ATCAATGGACCACAAAGTGTACCGGGCGAA 572
consensus_5726#3      ----------------------AAGCTAA-ATCAATGGACCACAAAGTGTACCGGGCGAA 374
consensus_5726#0      AGAGAGATAACGGAA--TAACACAACAAA-ACCCTTGTGCT-AAT--------------- 624
consensus_5726#2      GTGCTAATAACGAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAA 409
                                             * * **      *       *                

consensus_5726#1      GCGCAAAATCAATCAGCC----ATTCTGCCCCTCCACAAGTGAGCACGGTCGAC------ 622
consensus_5726#3      GCGCAAAATCAATCAGCC----ATTCTGCC------------------------------ 400
consensus_5726#0      ------------------------------------------------------------
consensus_5726#2      ACGAAAGGAAAATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAG 469
                                                                                  

consensus_5726#1      --------
consensus_5726#3      --------
consensus_5726#0      --------
consensus_5726#2      GCATGTGC 477