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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1059 fasta sequence
[CCGGGGGAAGCTGCTGTCGAAAATTTTCGGCAACAAGGAAATGCGAATCCTGATGCTGGGACTGGATGCTGCCGGCAAAACAACTATACTGTATAAGCTAAAGTTAGGTCAATCGGTAACCACAATTCCAACGGTCGGCTTCAACGTCGAAACCGTAACGTACAAGAACGTCAAATTCAACGTGTGGGACGTTGGTGGGCAGGACAAAATCCGACCCTTATGGAGGCACTACTATACGGGTACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCGGCAGGAGCTGCACCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATTTGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCCACCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCCATTCGGACCTGCTGCTGCTGCTGCTGCTGCTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAA--ATAGACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGNCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCT--TCCTCCTCTCACCATAGACGATCGCTCTTGTGTCTCTGCGCTACTATTCATACGAAGTANGACAAATAGCGGAGCATAAATGGCATCAGGAAGCGAATGTAAAAGAGTAAAAGCGTTAGAGATCAAGAGGAAGGGAGAGGGAGGTTGGTAGGTCCATCCATCTATCCATGTGCCNGCAATACATGGCATTGTTGCAAAAAGTAGATACGGTACTANGACAAACGGACGGCCAAGATAAAAGCNAAAACTCGTTTTTTTCACATCTCCCACA]
[+] EMBL BM621953 [CCGGGGGAAGCTGCTGTCGAAAATTTTCGGCAACAAGGAAATGCGAATCCTGATGCTGGGACTGGATGCTGCCGGCAAAACAACTATACTGTATAAGCTAAAGTTAGGTCAATCGGTAACCACAATTCCAACGGTCGGCTTCAACGTCGAAACCGTAACGTACAAGAACGTCAAATTCAACGTGTGGGACGTTGGTGGGCAGGACAAAATCCGACCCTTATGGAGGCACTACTATACGGGTACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCGGCAGGAGCTGCACCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATTTGCAAACAAGCAAGACCTGCCAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCC CCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCC ]
[+] EMBL BX623276 [ AATCCGACCCTTATGGAGGCACTACTATACGGGTACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCGGCAGGAGCTGCNCCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATTTGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCATCCCTCCTGTGCCACCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCCATTCGGACCTGCTGCTGCTGCTGCTGCTGCTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAA ATAGACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGNCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCT TCCTCCTCTCACCATAGACGATCGCTCTTGTGTCTCTGCGCTACTAT ]
[+] EMBL BX625442 [ ATTTGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGGCCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCCACCACCGGCGACGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTAAGCATCGCAACGGGACTGGCACACTACACCCATTCGGAC CTGCTGCTGCTGCTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAACACACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCG CCTGTTTCAGCTTCTCCCTCGTTTCGACAACCCGCCATCCTCCTTCTCCTCCTTACACCATCGACGATCGGTCTTGTGTTTCTGCGCTACTATTCATACGAAGTANGACAAATAGCGGAGCATAAATGGCATCAGGAAGCGAATGTAAAAGAGTAAAAGCGTTAGAGATCAAGAGGAAGGGAGAGGGAGGTTGGTAGGTCCATCCATCTATCCATGTGCCNGCAATACATGGCATTGTTGCAAAAAGTAGATACGGTACTANGACAAACGGACGGCCAAGATAAAAGCNAAAACTCGTTTTTTTCACATCTCCCACA]
consensusID : consensus_5744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CCGGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAATAGACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCTCCTCCTCTCACCATAGACGATCACTCTTGTGTCTCTGCGCTACTATTCATACAAAGTAGGACAAACAGCGGAGCATAAATAATATCAGGAAGCGAATATAAAAGAGTAAGAGCGTTAGAGATCAAGAGGAATCGAAAGGGAGGTTGTTTGGTCCATCCATCTATCCATGTGCCGGCCATACATGGCATTGTTGCAAAATTAGATACACTGATAGGACAAACGGACGGCAAGATAAAAGCAAAAACTCGTTTTTTCAACTTCTCCCACACGTTCTTCGTCCAAACATGAAGCTGAAAGGAAGGATCGTTTAAGACCGTCGCATCCTTGCTGTGTGCGTGTGTGTGTGTGTGTTTGTGTAGTCCGTAATAGTAAGCAGAAGCAACAAACCCAAATGTGGTTATATAAATTATCTAATTCTAATGCGACGATCGAATTGATACGATCGGGAGATCAACGTGTGCTCATCTTCCGTTCGAACGCCCCAATGCATGCGGTGGCGGTG]
[+] EMBL BM601831 [CCGGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAATAGACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAAAAGCAAATGAAATCCTCCTCCAGCGCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGACCTTCCTCCTCCTCCTCTCACCATAGACGATCACTCTTGTGTCTCTGCGCTACTATTCATACAAAGTAGGACAAACAGCGGAGCATAAATAATATCAGGAAGCGAATATAAAAGAGTAAGAGCGTTAGAGATCAAGAGGAATCGAAAGGGAGGTTGTTTGGTCCATCCATCTATCCATGTGCCGGCCATACATGGCATTGTTGCAAAATTAGATACACTGATAGGACAAACGGACGGCAAGATAAAAGCAAAAACTCGTTTTTTCAACTTCTCCCACACGTTCTTCGTCCAAACATGAAGCTGAAAGGAAGGATCGTTTAAGACCGTCGCATCCTTGCTGTGTGCGTGTGTGTGTGTGTGTTTGTGTAGTCCGTAATAGTAAGCAGAAGCAACAAACCCAAATGTGGTTATATAAATTATCTAATTCTAATGCGACGATCGAATTGATACGATCGGGAGATCAACGTGTGCTCATCTTCCGTTCGAACGCCCCAATGCATGCGGTGGCGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5744#0 CCGGGGGAAGCTGCTGTCGAAAATTTTCGGCAACAAGGAAATGCGAATCCTGATGCTGGG 60
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 ACTGGATGCTGCCGGCAAAACAACTATACTGTATAAGCTAAAGTTAGGTCAATCGGTAAC 120
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 CACAATTCCAACGGTCGGCTTCAACGTCGAAACCGTAACGTACAAGAACGTCAAATTCAA 180
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 CGTGTGGGACGTTGGTGGGCAGGACAAAATCCGACCCTTATGGAGGCACTACTATACGGG 240
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 TACTCAAGGATTAATTTTCGTGGTGGACTGTGCGGACCGCGACCGGATAGATGAAGCGCG 300
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 GCAGGAGCTGCACCGGATAATAAATGATCGCGAGATGCGGGATGCGATCATACTGATATT 360
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 TGCAAACAAGCAAGACCTGCTAGAAGCAATGAAACCTCACGAAATTCAGGAAAAGCTTGG 420
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 CCTGACGCGAATACGCGACCGGAACTGGTACGTGCAGCCCTCCTGTGCCACCACCGGCGA 480
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 CGGTCTGTACGAGGGACTAACGTGGCTAACGTCCAACCACAAATTATGAGAATAATTGTA 540
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 AGCATCGCAACGGGACTGGCACACTACACCCATTCGGACCTGCTGCTGCTGCTGCTGCTG 600
consensus_5744#1 ------------------------------------------------------------
consensus_5744#0 CTGAGCGCCCTGTGGTGGTTGTTGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAAT 660
consensus_5744#1 --------------------CCGGCGAAGCCGTCTTAGCAGCAAGAACATCCCACAAAAT 40
*************************************
consensus_5744#0 AGACACACACAC--CCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAA 718
consensus_5744#1 AGACACACACACACCCGCGCAAGCTCACATCTATACATATATATTTAAACATATGCAGAA 100
************ **********************************************
consensus_5744#0 AAGCAAATGAAATCCTCCTCCAGCGNCCTGTTTCAGCTTCTCACTCGGCTCGACCACCGA 778
consensus_5744#1 AAGCAAATGAAATCCTCCTCCAGCGCC-TGTTTCAGCTTCTCACTCGGCTCGACCACCGA 159
************************* * ********************************
consensus_5744#0 CCTTCCTCCTTCCTCCTCTCACCATAGACGATCGCTCTTGTGTCTCTGCGCTACTATTCA 838
consensus_5744#1 CCTTCCTCCT-CCTCCTCTCACCATAGACGATCACTCTTGTGTCTCTGCGCTACTATTCA 218
********** ********************** **************************
consensus_5744#0 TACGAAGTANGACAAATAGCGGAGCATAAATGGCATCAGGAAGCGAATGTAAAAGAGTAA 898
consensus_5744#1 TACAAAGTAGGACAAACAGCGGAGCATAAATAATATCAGGAAGCGAATATAAAAGAGTAA 278
*** ***** ****** ************** ************** ***********
consensus_5744#0 AAGCGTTAGAGATCAAGAGGAAGGGAGAGGGAGGTTGGTAGGTCCATCCATCTATCCATG 958
consensus_5744#1 GAGCGTTAGAGATCAAGAGGAATCGAAAGGGAGGTTGTTTGGTCCATCCATCTATCCATG 338
********************* ** ********** * ********************
consensus_5744#0 TGCCNGCAATACATGGCATTGTTGCAAAAAGTAGATACGGTACTANGACAAACGGACGGC 1018
consensus_5744#1 TGCCGGCCATACATGGCATTGTTGCAAAAT-TAGATACACTGATAGGACAAACGGACGGC 397
**** ** ********************* ******* * ** **************
consensus_5744#0 CAAGATAAAAGCNAAAACTCGTTTTTTTCACATCTCCCACA------------------- 1059
consensus_5744#1 -AAGATAAAAGCAAAAACTCGTTTTTTCAACTTCTCCCACACGTTCTTCGTCCAAACATG 456
*********** ************** ** *********
consensus_5744#0 ------------------------------------------------------------
consensus_5744#1 AAGCTGAAAGGAAGGATCGTTTAAGACCGTCGCATCCTTGCTGTGTGCGTGTGTGTGTGT 516
consensus_5744#0 ------------------------------------------------------------
consensus_5744#1 GTGTTTGTGTAGTCCGTAATAGTAAGCAGAAGCAACAAACCCAAATGTGGTTATATAAAT 576
consensus_5744#0 ------------------------------------------------------------
consensus_5744#1 TATCTAATTCTAATGCGACGATCGAATTGATACGATCGGGAGATCAACGTGTGCTCATCT 636
consensus_5744#0 -----------------------------------
consensus_5744#1 TCCGTTCGAACGCCCCAATGCATGCGGTGGCGGTG 671
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||