cluster # 5759

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Anopheles gambiae
cluster # 5759 cluster # 5759 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5759#0 length = 733 sequences # 2

consensus_5759#1 length = 564 sequences # 1
consensus_5759#2 length = 513 sequences # 1

consensusID : consensus_5759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence

                              [CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGATGTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAAGATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAAGAAGATTATGAGG]

[+] EMBL BM617336             [CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGATGTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAAGATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAAGAAGATTATGAGG]
[+] EMBL BM604368             [      ccggttgCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCTGAGGAAGAGGAGATGGACAGCGATGTAGAAGAGGAAGAGGAT                                                                                                                   ]




>consensus_5759#0
CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTG
TGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC
CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT
TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG
CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC
GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG
TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG
AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT
GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT
CTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGAT
GTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAA
GATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAA
GAAGATTATGAGG

consensusID : consensus_5759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATG]

[+] EMBL BM610314             [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATG]




>consensus_5759#1
CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAA
ATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCA
GAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAA
ATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACG
AAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCG
GAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAA
ACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAAC
TTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAG
GTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAG
AGCGATTCGGAGGAAGAGGAGATG

consensusID : consensus_5759#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CCGCGGACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAG]

[+] EMBL BM603530             [CCGCGGACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAG]




>consensus_5759#2
CCGCGGACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGA
CCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGAT
GAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATG
CTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAA
GTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGA
CAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGC
CATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGAT
GAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAG
AAGTTTCTTCAACGGGCGGAATCGGAAGATGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5759#1      ---------------------CCGCG-GACGCGTGGGC-----GGACGCGTGGGCTTTTG 33
consensus_5759#2      ------------------------------------------------------CCGCGG 6
consensus_5759#0      CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTG 60
                                                                            *    *

consensus_5759#1      TGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC 93
consensus_5759#2      ACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC 66
consensus_5759#0      TGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC 120
                          ***  ***************************************************

consensus_5759#1      CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT 153
consensus_5759#2      CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT 126
consensus_5759#0      CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT 180
                      ************************************************************

consensus_5759#1      TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG 213
consensus_5759#2      TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG 186
consensus_5759#0      TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG 240
                      ************************************************************

consensus_5759#1      CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC 273
consensus_5759#2      CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC 246
consensus_5759#0      CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC 300
                      ************************************************************

consensus_5759#1      GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG 333
consensus_5759#2      GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG 306
consensus_5759#0      GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG 360
                      ************************************************************

consensus_5759#1      TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG 393
consensus_5759#2      TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG 366
consensus_5759#0      TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG 420
                      ************************************************************

consensus_5759#1      AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT 453
consensus_5759#2      AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT 426
consensus_5759#0      AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT 480
                      ************************************************************

consensus_5759#1      GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT 513
consensus_5759#2      GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT 486
consensus_5759#0      GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT 540
                      ************************************************************

consensus_5759#1      CTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATG--------- 564
consensus_5759#2      CTTCAACGGGCGGAATCGGAAGATGAG--------------------------------- 513
consensus_5759#0      CTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGAT 600
                      ***************************                                 

consensus_5759#1      ------------------------------------------------------------
consensus_5759#2      ------------------------------------------------------------
consensus_5759#0      GTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAA 660
                                                                                  

consensus_5759#1      ------------------------------------------------------------
consensus_5759#2      ------------------------------------------------------------
consensus_5759#0      GATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAA 720
                                                                                  

consensus_5759#1      -------------
consensus_5759#2      -------------
consensus_5759#0      GAAGATTATGAGG 733