cluster # 5764

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Anopheles gambiae
cluster # 5764 cluster # 5764 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5764#0 length = 998 sequences # 3

consensus_5764#1 length = 564 sequences # 1

consensusID : consensus_5764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 998
fasta sequence

                              [CCGAAAAAAACATTGAAATGCACAATTTTGGTTGAAAACACGTGTTTTTTATAGTTTGATTTGTAGTTTTATTGTTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAAACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAAGAGTAGGAATCTTCTTTCGAACGAATCCGAGGCTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGACTTTGGCTCGACCGAGTACTGGAACAGTTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGAGTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGATGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTCAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTTCCCGAACGAAACGTTCTCCGTCGTGCTGGACAAGGGTACGCTCGATGCACTGTTCACCGATGAGTCTACCTCCGTTGTTACCATGGTGCGCAACTACTTTGCCGAAATTGGTCGCGTTCTGCGTCCAGCCGGCCGGTACGTTTGCATATCGCTCCTGCAGGAGCACATCCTCCGGGAGGTTGTGAGCCACTTTCCGGCCGCCCACTTTATGCTGCGCATTGTACGGTGCCCCGAGGCAGGCAAAGGCCGTGGAACGGAAGACGCTCCCAATGCGGACGGCTCCTCGCTCGTAGTGTTTGCGATTGTGGCAACAAAGTTGAAAAACATGCCACTGCGCGTGCTTGAGGTAGGCCTCGCCGGCAGTCACATAGAGCGGGTGCAGCGGCCCGAAGAGATTATAGCAGCCGTAGCTGCCACCCAGAAAGCGGCCATGGTTTGCAATGGGTTGGCCCGCGGTA]

[+] EMBL BM637578             [CCGAAAAAAACATTGAAATGCACAATTTTGGTTGAAAACACGTGTTTTTTATAGTTTGATTTGTAGTTTTATTGTTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAAACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAAGAGTAGGAATCTTCTTTCGAACGAATCCGAGGCTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGACTTTGGCTCGACCGAGTACTGGAACAGTTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGAGTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGATGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTCAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTTCCCGAACGAAACGTTCTCCGTCGTGCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX604256             [                                                           TTTGTAGTTTTATTGTTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAAACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAGGAGTAGGAATCTTCTTTCGAACGAATCCGAGGCTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGACTTTGGCTCGACCGAGTACTGGAACAGCTTCTTCCGGAAGCGTGGCAAGCAAGCGTTCGAGTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATTAAGCCGAAGGATGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTCAAGAAAATCACCAACATCGACATATCGCCTGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGTACGCAACCGCGATGACCTTCCCGAACGAAACGTTCTCCGTCGTGCTGGACAAGGGTACGCTCGATGCACTGTTCACCGATGAGTCTACCTCCGTTGTTACCATGGTGCGCAACTACTTTGCCGAAATTGGTCGCGTTCTGCGTCCAGCCGGCCGGTACGTTTGCATATCGCTCCTGCAGGAGCACAT                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM656960             [                                                                                                                                                                                                                                                                                                                                                                                           ccgGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTTAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTTCCCGAACGAAACGTTCTCCGTCGTGCTGGACAAGGGTACGCTCGATGCACTGTTCACCGATGAGTCTACCACCGTCGTTACCATGGTGCGCAACTACTTTGCCGAAATTGGTCGCGTTCTGCGTCCAGCCGGCCGGTACGTTTGCATATCGCTCCTGCAGGAGCACATCCTCCGGGAGGTTGTGAGCCACTTTCCGGCCGCCCACTTTATGCTGCGCATTGTACGGTGCCCCGAGGCAGGCAAAGGCCGTGGAACGGAAGACGCTCCCAATGCGGACGGCTCCTCGCTCGTAGTGTTTGCGATTGTGGCAACAAAGTTGAAAAACATGCCACTGCGCGTGCTTGAGGTAGGCCTCGCCGGCAGTCACATAGAGCGGGTGCAGCGGCCCGAAGAGATTATAGCAGCCGTAGCTGCCACCCAGAAAGCGGCCATGGTTTGCAATGGGTTGGCCCGCGGTA]




>consensus_5764#0
CCGAAAAAAACATTGAAATGCACAATTTTGGTTGAAAACACGTGTTTTTTATAGTTTGAT
TTGTAGTTTTATTGTTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAA
ACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAAGAGTAGGAATCTTCTTTCGAACG
AATCCGAGGCTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGA
CTTTGGCTCGACCGAGTACTGGAACAGTTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGA
GTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGA
TGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGG
GTTCAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGC
GAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTT
CCCGAACGAAACGTTCTCCGTCGTGCTGGACAAGGGTACGCTCGATGCACTGTTCACCGA
TGAGTCTACCTCCGTTGTTACCATGGTGCGCAACTACTTTGCCGAAATTGGTCGCGTTCT
GCGTCCAGCCGGCCGGTACGTTTGCATATCGCTCCTGCAGGAGCACATCCTCCGGGAGGT
TGTGAGCCACTTTCCGGCCGCCCACTTTATGCTGCGCATTGTACGGTGCCCCGAGGCAGG
CAAAGGCCGTGGAACGGAAGACGCTCCCAATGCGGACGGCTCCTCGCTCGTAGTGTTTGC
GATTGTGGCAACAAAGTTGAAAAACATGCCACTGCGCGTGCTTGAGGTAGGCCTCGCCGG
CAGTCACATAGAGCGGGTGCAGCGGCCCGAAGAGATTATAGCAGCCGTAGCTGCCACCCA
GAAAGCGGCCATGGTTTGCAATGGGTTGGCCCGCGGTA

consensusID : consensus_5764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CCGCCCACGCGTCCGATTTTGGTTGAAAACACGTGTTTTTCACAGTTTTATTTGTAGTTTTATTGCTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAAACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAGGAGTAGGAATCTTCTTTCGAACGAATCCGAGGTTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGACTTTGGCTCGACCGAGTACTGGAACAGCTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGAGTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGATGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTTAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTTCCCGAACGAAACGTTCTCCGTCGTGCTGGACAA]

[+] EMBL BM603765             [CCGCCCACGCGTCCGATTTTGGTTGAAAACACGTGTTTTTCACAGTTTTATTTGTAGTTTTATTGCTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAAACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAGGAGTAGGAATCTTCTTTCGAACGAATCCGAGGTTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGACTTTGGCTCGACCGAGTACTGGAACAGCTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGAGTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGATGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTTAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTTCCCGAACGAAACGTTCTCCGTCGTGCTGGACAA]




>consensus_5764#1
CCGCCCACGCGTCCGATTTTGGTTGAAAACACGTGTTTTTCACAGTTTTATTTGTAGTTT
TATTGCTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAAACAACTCGT
GTTTCATCAAAATTCCCTCACAGCGAAGGAGTAGGAATCTTCTTTCGAACGAATCCGAGG
TTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGACTTTGGCTC
GACCGAGTACTGGAACAGCTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGAGTGGTACGG
CGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGATGAAATACT
CGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGGGTTTAAGAA
AATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGCGAACCGGCT
CAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTTCCCGAACGA
AACGTTCTCCGTCGTGCTGGACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5764#0      CCGAAAAAAACATTGAAATGCACAATTTTGGTTGAAAACACGTGTTTTTTATAGTTTGAT 60
consensus_5764#1      ---------CCGCCCACGCGTCCGATTTTGGTTGAAAACACGTGTTTTTCACAGTTTTAT 51
                                *    *   *  * ************************* * ***** **

consensus_5764#0      TTGTAGTTTTATTGTTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAA 120
consensus_5764#1      TTGTAGTTTTATTGCTTATAATGCAGATTGTGTTGTAGATAGTAAGAACAATAGACGGAA 111
                      ************** *********************************************

consensus_5764#0      ACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAAGAGTAGGAATCTTCTTTCGAACG 180
consensus_5764#1      ACAACTCGTGTTTCATCAAAATTCCCTCACAGCGAAGGAGTAGGAATCTTCTTTCGAACG 171
                      ************************************ ***********************

consensus_5764#0      AATCCGAGGCTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGA 240
consensus_5764#1      AATCCGAGGTTCGCGGTCGCGTCGAACAGCAATGAATCTGCTGCCCAAAAGTACGGCCGA 231
                      ********* **************************************************

consensus_5764#0      CTTTGGCTCGACCGAGTACTGGAACAGTTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGA 300
consensus_5764#1      CTTTGGCTCGACCGAGTACTGGAACAGCTTCTTCCGCAAGCGTGGCAAGCAAGCGTTCGA 291
                      *************************** ********************************

consensus_5764#0      GTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGA 360
consensus_5764#1      GTGGTACGGCGAGTATCCGGAACTGTGTACCCAGCTGCATCAGTACATCAAGCCGAAGGA 351
                      ************************************************************

consensus_5764#0      TGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGG 420
consensus_5764#1      TGAAATACTCGTCGTCGGTTGTGGTAACTCGAAGCTGAGCATGGACCTGTACGATGTGGG 411
                      ************************************************************

consensus_5764#0      GTTCAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGC 480
consensus_5764#1      GTTTAAGAAAATCACCAACATCGACATATCGCCCGTCGTCATCAAACAGATGCAGGAAGC 471
                      *** ********************************************************

consensus_5764#0      GAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTT 540
consensus_5764#1      GAACCGGCTCAATCGGCCCGAAATGACCTGGAACCAGATGGACGCAACCGCGATGACCTT 531
                      ************************************************************

consensus_5764#0      CCCGAACGAAACGTTCTCCGTCGTGCTGGACAAGGGTACGCTCGATGCACTGTTCACCGA 600
consensus_5764#1      CCCGAACGAAACGTTCTCCGTCGTGCTGGACAA--------------------------- 564
                      *********************************                           

consensus_5764#0      TGAGTCTACCTCCGTTGTTACCATGGTGCGCAACTACTTTGCCGAAATTGGTCGCGTTCT 660
consensus_5764#1      ------------------------------------------------------------
                                                                                  

consensus_5764#0      GCGTCCAGCCGGCCGGTACGTTTGCATATCGCTCCTGCAGGAGCACATCCTCCGGGAGGT 720
consensus_5764#1      ------------------------------------------------------------
                                                                                  

consensus_5764#0      TGTGAGCCACTTTCCGGCCGCCCACTTTATGCTGCGCATTGTACGGTGCCCCGAGGCAGG 780
consensus_5764#1      ------------------------------------------------------------
                                                                                  

consensus_5764#0      CAAAGGCCGTGGAACGGAAGACGCTCCCAATGCGGACGGCTCCTCGCTCGTAGTGTTTGC 840
consensus_5764#1      ------------------------------------------------------------
                                                                                  

consensus_5764#0      GATTGTGGCAACAAAGTTGAAAAACATGCCACTGCGCGTGCTTGAGGTAGGCCTCGCCGG 900
consensus_5764#1      ------------------------------------------------------------
                                                                                  

consensus_5764#0      CAGTCACATAGAGCGGGTGCAGCGGCCCGAAGAGATTATAGCAGCCGTAGCTGCCACCCA 960
consensus_5764#1      ------------------------------------------------------------
                                                                                  

consensus_5764#0      GAAAGCGGCCATGGTTTGCAATGGGTTGGCCCGCGGTA 998
consensus_5764#1      --------------------------------------