cluster # 5765

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Anopheles gambiae
cluster # 5765 cluster # 5765 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5765#0 length = 1272 sequences # 3

consensus_5765#1 length = 221 sequences # 1

consensusID : consensus_5765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1272
fasta sequence

                              [AGCAGATCGGCACGAGGCCGGTTATACGATCGCGATCTAAAGGATGGAGAGGTGATTGACACGATTGGAGGAATGCCTGTCAAGATACAACGCACGTTCGAAAACACGGTGCGTGTCAATTCGGCCCGTATTGTAGAGTCAGAAGTATTTGTCTACAATCTGGGAACGATGTTTTACATCGATGACGTGCTCTATCCGGATCTTCTAAAGGATGAAGTTAAAGCGATCACAGATTTAAAAAATGTGGACCGCAATGTGCCAGATGGTATTGGTGCTAGTGATGCATACACAACGGAACAAAACCCTCCAATGACCGATCGATCGACAACCACCACCTTCCGATCGCTCTACGGATTGCTAACGACCAATGCCGATGTGGAGTTGGTACCATTGGAAGTTACTGAATCCAGCAAACGCAACAGTGACGAAGATAGTGCTCAGTTTCAGGACGATGAAATCATTACGCCCAAAGCGCTACCCGTAAGATATTTTTACAACCCCAAGAAGTAACGTGCTTCGACGTGCATTACATATCAATTTGTGCACTCAGAACACGATTGTAATGAGCCTTGAGCGAAACTATATTTATCCTCACGAATTGTAGAATATGCTGTAACTGTAACACTATGTGGCATATCCGCCAAGAAGGAGTCGCTGCCTCACAGCCGGACAGTTGGTATAATTCATTTTAGATTCCATTCATTTGCCATACACCAATTAAAAAGTGCATAGGAGCCAATTAGTGATGTTTATTGTAGAAAACTTTCAACAAAGCAGCATTAATTCGATTGCTGTCTATAAATGCCATTACCAATACGTTTAAAGAGCAATGTAGGTTAAAAGACCAGTAAACAATTTTTTTTTTAAATTGAGATAATTGTGTTACTATTCAAAGGAAAAAAATGAAAAGGCCTACCAAAAAACCCCTCATAAATGAGGTATGACAATGAATATGATAATGTGAAGCAAAAAAACAGAACAATAATGTGCTATCTAGGCAAAATTGTGCATCAGCGGAGACAACGTATACCACTCTCTAACAAGTATTGCTACTCTATAACTGGTTACTGCTTTCAAGATTTCTACTGGTAAACATAGAATAACCAACTGCATCATCTTGGATACGGCAGCATAGACATTCCGAGGACTTCACATTCAGGTAGGTACTAAGTACAGGCATCTCATTAAGCTAAGTGTAAAGACGTTGTTTAATTTTGCATATTATTTGGAAGTAGCTTCGCTTACTGCTATTTTTTTTTCTTTATTTCTGGG]

[+] EMBL BX619427             [AGCAGATCGGCACGAGGCCGGTTATACGATCGCGATCTAAAGGATGGAGAGGTGATTGACACGATTGGAGGAATGCCTGTCAAGATACAACGCACGTTCGAAAACACGGTGCGTGTCAATTCGGCCCGTATTGTAGAGTCAGAAGTATTTGTCTACAATCTGGGAACGATGTTTTACATCGATGACGTGCTCTATCCGGATCTTCTAAAGGATGAAGTTAAAGCGATCACAGATTTAAAAAATGTGGACCGCAATGTGCCAGATGGTATTGGTGCTAGTGATGCATACACAACGGAACAAAACCCTCCAATGACCGATCGATCGACAACCACCACCTTCCGATCGCTCTACGGATTGCTAACGACCAATGCCGATGTGGAGTTGGTACCATTGGAAGTTACTGAATCCAGCAAACGCAACAGTGACGAAGATAGTGCTCAGTTTCAGGACGATGAAATCATTACGCCCAAAGCGCTACCCGTAAGATATTTTTACAACCCCAAGAAGTAACGTGCTTCGACGTGCATTACATATCAATTTGTGCACTCAGAACACGATTGTAATGAGCCTTGAGCGAAACTATATTTATCCTCACGAATTGTAGAATATGCTGTAACTGTAACACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX627358             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGCTACCCGTAAGATATTTTTACAACCCCAAGAAGTAACGTGCTTCGACGTGCATTACATATCAATTTGTGCACTCAGAACACGATTGTAATGAGCCTTGAGCGAAACTATATTTATCCTCACGAATTGTAGAATATGCTGTAACTGTAACACTATGTGGCATATCCGCCAAGAAGGAGTCGCTGCCTCACAGCCGGACAGTTGGTATAATTCATTTTAGATTCCATTCATTTGCCATACACCAATTAAAAAGTGCATAGGAGCCAATTAGTGATGTTTATTGTAGAAAACTTTCAACAAAGCAGCATTAATTCGATTGCTGTCTATAAATGCCATTACCAATACGTTTAAAGAGCAATGTAGGTTAAAAGACCAGTAAACAATTTTTTTTTTAAATTGAGATAATTGTGTTACTATTCAAAGGAAAAAAATGAAAAGGCCTACCAAAAAACCCCTCATAAATGAGGTATGACAATGAATATGATAATGTGAAGCAAAAAAACAGAACAATAATGTGCTATCTAGGCAAAATTGTGCATCAGCGGAGACAACGTATACCACTCTCTAACAAGTATTGCTACTCTATAACTGGTTACTGCTTTCAAGATTTCTACTGGTAAACATAGAATAACCAACTGCATCATCTTGGATACGGCAGCATAGACATTCCGAGGA                                                                                                                             ]
[+] EMBL BX618713             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGTAGAAAACTTTCAACAAAGCAGCATTAATTCGATTGTTGTCTATAAATGCCATTACCAATACGTTTAAAGAGCAATGTAGGTTAAAAGACCAGTAAACAATTTTTTTTTTAAATTGAGACAATTGTGTTACTATTCAAAGGAAAAAAATGAAAAGGCCTACCAAAAAACCCCTCATAAATGAGGTATGACAATGAATATGATAATGTGAAGCAAAAAAACAGAACAATAATGTGCTATCTAGGCAAAATTGTGCATCAGCGGAGACAACGTATACCACTCTCTAACAAGTATTGCTACTCTATAACTGGTTACTGCTTTCAAGATTTCTACTGGTAAACATAGAATAACCAACTGCATCATCTTGGATACGGCAGCATAGACATTCCGAGGACTTCACATTCAGGTAGGTACTAAGTACAGGCATCTCATTAAGCTAAGTGTAAAGACGTTGTTTAATTTTGCATATTATTTGGAAGTAGCTTCGCTTACTGCTATTTTTTTTTCTTTATTTCTGGG]




>consensus_5765#0
AGCAGATCGGCACGAGGCCGGTTATACGATCGCGATCTAAAGGATGGAGAGGTGATTGAC
ACGATTGGAGGAATGCCTGTCAAGATACAACGCACGTTCGAAAACACGGTGCGTGTCAAT
TCGGCCCGTATTGTAGAGTCAGAAGTATTTGTCTACAATCTGGGAACGATGTTTTACATC
GATGACGTGCTCTATCCGGATCTTCTAAAGGATGAAGTTAAAGCGATCACAGATTTAAAA
AATGTGGACCGCAATGTGCCAGATGGTATTGGTGCTAGTGATGCATACACAACGGAACAA
AACCCTCCAATGACCGATCGATCGACAACCACCACCTTCCGATCGCTCTACGGATTGCTA
ACGACCAATGCCGATGTGGAGTTGGTACCATTGGAAGTTACTGAATCCAGCAAACGCAAC
AGTGACGAAGATAGTGCTCAGTTTCAGGACGATGAAATCATTACGCCCAAAGCGCTACCC
GTAAGATATTTTTACAACCCCAAGAAGTAACGTGCTTCGACGTGCATTACATATCAATTT
GTGCACTCAGAACACGATTGTAATGAGCCTTGAGCGAAACTATATTTATCCTCACGAATT
GTAGAATATGCTGTAACTGTAACACTATGTGGCATATCCGCCAAGAAGGAGTCGCTGCCT
CACAGCCGGACAGTTGGTATAATTCATTTTAGATTCCATTCATTTGCCATACACCAATTA
AAAAGTGCATAGGAGCCAATTAGTGATGTTTATTGTAGAAAACTTTCAACAAAGCAGCAT
TAATTCGATTGCTGTCTATAAATGCCATTACCAATACGTTTAAAGAGCAATGTAGGTTAA
AAGACCAGTAAACAATTTTTTTTTTAAATTGAGATAATTGTGTTACTATTCAAAGGAAAA
AAATGAAAAGGCCTACCAAAAAACCCCTCATAAATGAGGTATGACAATGAATATGATAAT
GTGAAGCAAAAAAACAGAACAATAATGTGCTATCTAGGCAAAATTGTGCATCAGCGGAGA
CAACGTATACCACTCTCTAACAAGTATTGCTACTCTATAACTGGTTACTGCTTTCAAGAT
TTCTACTGGTAAACATAGAATAACCAACTGCATCATCTTGGATACGGCAGCATAGACATT
CCGAGGACTTCACATTCAGGTAGGTACTAAGTACAGGCATCTCATTAAGCTAAGTGTAAA
GACGTTGTTTAATTTTGCATATTATTTGGAAGTAGCTTCGCTTACTGCTATTTTTTTTTC
TTTATTTCTGGG

consensusID : consensus_5765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [GGATCTCCTAAAGGATGAAGTGAAAGCGATCACAGATCGAAAAAAGGTGGACCGCAATGTGCCAGAAGGTATCGGTGCTAGTGATGCATACACAACGGAACAAAACCCTCCAAGGACCGATCGATCGACGAACACCACCTCCCGATCGCTCTACGGATGGCTAACGACCAAGGCCGATGTGGGAGGGGTACCACGGGAAGTCACCGAATCCAGCAAACGCA]

[+] EMBL BX612070             [GGATCTCCTAAAGGATGAAGTGAAAGCGATCACAGATCGAAAAAAGGTGGACCGCAATGTGCCAGAAGGTATCGGTGCTAGTGATGCATACACAACGGAACAAAACCCTCCAAGGACCGATCGATCGACGAACACCACCTCCCGATCGCTCTACGGATGGCTAACGACCAAGGCCGATGTGGGAGGGGTACCACGGGAAGTCACCGAATCCAGCAAACGCA]




>consensus_5765#1
GGATCTCCTAAAGGATGAAGTGAAAGCGATCACAGATCGAAAAAAGGTGGACCGCAATGT
GCCAGAAGGTATCGGTGCTAGTGATGCATACACAACGGAACAAAACCCTCCAAGGACCGA
TCGATCGACGAACACCACCTCCCGATCGCTCTACGGATGGCTAACGACCAAGGCCGATGT
GGGAGGGGTACCACGGGAAGTCACCGAATCCAGCAAACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5765#0      AGCAGATCGGCACGAGGCCGGTTATACGATCGCGATCTAAAGGATGGAGAGGTGATTGAC 60
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      ACGATTGGAGGAATGCCTGTCAAGATACAACGCACGTTCGAAAACACGGTGCGTGTCAAT 120
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TCGGCCCGTATTGTAGAGTCAGAAGTATTTGTCTACAATCTGGGAACGATGTTTTACATC 180
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GATGACGTGCTCTATCCGGATCTTCTAAAGGATGAAGTTAAAGCGATCACAGATTTAAAA 240
consensus_5765#1      -----------------GGATCTCCTAAAGGATGAAGTGAAAGCGATCACAGATCGAAAA 43
                                       ****** ************** ***************  ****

consensus_5765#0      AATGTGGACCGCAATGTGCCAGATGGTATTGGTGCTAGTGATGCATACACAACGGAACAA 300
consensus_5765#1      AAGGTGGACCGCAATGTGCCAGAAGGTATCGGTGCTAGTGATGCATACACAACGGAACAA 103
                      ** ******************** ***** ******************************

consensus_5765#0      AACCCTCCAATGACCGATCGATCGACAACCACCACCTTCCGATCGCTCTACGGATTGCTA 360
consensus_5765#1      AACCCTCCAAGGACCGATCGATCGACGAACACCACCTCCCGATCGCTCTACGGATGGCTA 163
                      ********** *************** * ******** ***************** ****

consensus_5765#0      ACGACCAATGCCGATGTGGAGTTGGTACCATTGGAAGTTACTGAATCCAGCAAACGCAAC 420
consensus_5765#1      ACGACCAAGGCCGATGTGGGAGGGGTACCACGGGAAGTCACCGAATCCAGCAAACGCA-- 221
                      ******** **********    *******  ****** ** ****************  

consensus_5765#0      AGTGACGAAGATAGTGCTCAGTTTCAGGACGATGAAATCATTACGCCCAAAGCGCTACCC 480
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GTAAGATATTTTTACAACCCCAAGAAGTAACGTGCTTCGACGTGCATTACATATCAATTT 540
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GTGCACTCAGAACACGATTGTAATGAGCCTTGAGCGAAACTATATTTATCCTCACGAATT 600
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GTAGAATATGCTGTAACTGTAACACTATGTGGCATATCCGCCAAGAAGGAGTCGCTGCCT 660
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      CACAGCCGGACAGTTGGTATAATTCATTTTAGATTCCATTCATTTGCCATACACCAATTA 720
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      AAAAGTGCATAGGAGCCAATTAGTGATGTTTATTGTAGAAAACTTTCAACAAAGCAGCAT 780
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TAATTCGATTGCTGTCTATAAATGCCATTACCAATACGTTTAAAGAGCAATGTAGGTTAA 840
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      AAGACCAGTAAACAATTTTTTTTTTAAATTGAGATAATTGTGTTACTATTCAAAGGAAAA 900
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      AAATGAAAAGGCCTACCAAAAAACCCCTCATAAATGAGGTATGACAATGAATATGATAAT 960
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GTGAAGCAAAAAAACAGAACAATAATGTGCTATCTAGGCAAAATTGTGCATCAGCGGAGA 1020
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      CAACGTATACCACTCTCTAACAAGTATTGCTACTCTATAACTGGTTACTGCTTTCAAGAT 1080
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TTCTACTGGTAAACATAGAATAACCAACTGCATCATCTTGGATACGGCAGCATAGACATT 1140
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      CCGAGGACTTCACATTCAGGTAGGTACTAAGTACAGGCATCTCATTAAGCTAAGTGTAAA 1200
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GACGTTGTTTAATTTTGCATATTATTTGGAAGTAGCTTCGCTTACTGCTATTTTTTTTTC 1260
consensus_5765#1      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TTTATTTCTGGG 1272
consensus_5765#1      ------------