cluster # 5781

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Anopheles gambiae
cluster # 5781 cluster # 5781 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5781#0 length = 554 sequences # 2

consensus_5781#1 length = 517 sequences # 1
consensus_5781#2 length = 516 sequences # 1

consensusID : consensus_5781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 554
fasta sequence

                              [GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAGGACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTACGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTGTGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGT]

[-] EMBL CNS08U1D             [GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAGGACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTACGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGAT                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM606142             [                               ccgAAACAATTTGCCGGCGGCGCGGAAAGCACGCACTCTTGTTTGCACAAAAGCAGCAAAGAAAAGCTATCCCGAAGGTAAAATTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTAATAATGGCACAAACAACCGT CGCGAATCAATCAACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTGTGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGT]




>consensus_5781#0
GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAG
GACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGA
GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTA
CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGAT
ACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTT
CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT
AACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC
CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTG
TGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAG
AAGAGATAACTCGT

consensusID : consensus_5781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [CCGGCGGCGCGGAAAGCACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG]

[+] EMBL CNS08U1C             [CCGGCGGCGCGGAAAGCACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG]




>consensus_5781#1
CCGGCGGCGCGGAAAGCACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCC
GAAGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATG
GCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGC
ATCGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTT
GGGTTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCG
GAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATG
CTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTT
CCCCCTCCCTGTGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAA
AAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG

consensusID : consensus_5781#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CCGAACAATTTGCCGGCGGCGCGGAAAGCACGCATTCTCGTTTGCACAAAAGCAGCAAGTAAAAGCGATCCCGAAGGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATTGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATCGTGGGCACGCTGCTTGGATTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGTGAAACGT]

[+] EMBL BM610780             [CCGAACAATTTGCCGGCGGCGCGGAAAGCACGCATTCTCGTTTGCACAAAAGCAGCAAGTAAAAGCGATCCCGAAGGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATTGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATCGTGGGCACGCTGCTTGGATTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAGAAGAGATAACTCGTGAAACGT]




>consensus_5781#2
CCGAACAATTTGCCGGCGGCGCGGAAAGCACGCATTCTCGTTTGCACAAAAGCAGCAAGT
AAAAGCGATCCCGAAGGTAAAGTTGTGAGCAGAAAATTTCGATTCCAACACGTAAAGTCA
GCTCCTTACAATGGCACAAACAACCGTCGCGAATCAATCGACATTGCTACCACTCGAGCT
GGTAGATAAATGCATTGGTTCGCGGATACACATCATCATGAAGAACGATAAGGAGATCGT
GGGCACGCTGCTTGGATTCGACGACTTCGTCAACATGCTGCTGGAGGACGTGACGGAGTA
CGAGAACACACCGGAAGGCCGGCGGATAACCAAGCTCGACCAGATCCTGCTGAACGGCAA
CAACATTACGATGCTCGTGCCCGGTTCCAGCGGCGATCTTCCGGAAGCATCGTAAAGCGC
TTGCAGCATATTTCCCCCTCCCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAA
CGCGAATAATGGAAGAAGAGATAACTCGTGAAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5781#0      GAATTCCTCGAGGACTGTTGGCCTACTGGAAAAAAAAAAATTTGCCGGCGGCGCGGGAAG 60
consensus_5781#2      --------------------------------CCGAACAATTTGCCGGCGGCGCGGAAAG 28
consensus_5781#1      --------------------------------------------CCGGCGGCGCGGAAAG 16
                                                                  ************ ***

consensus_5781#0      GACGGACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAGGTAAAGTTTTGA 120
consensus_5781#2      CACGCATTCTCGTTTGCACAAAAGCAGCAAGTAAAAGCGATCCCGAAGGTAAAGTTGTGA 88
consensus_5781#1      CACGCACTCTCGTTTGCACAAAAGCAGCAAAGAAAAGCGATCCCGAAG-TAAAGTTGTGA 75
                       *** * ***********************  **************** ******* ***

consensus_5781#0      GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTAAAATGGCACAAACAACCGTA 180
consensus_5781#2      GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGT- 147
consensus_5781#1      GCAGAAAATTTCGATTCCAACACGTAAAGTCAGCTCCTTACAATGGCACAAACAACCGT- 134
                      **************************************** ****************** 

consensus_5781#0      CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGAT 240
consensus_5781#2      CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATTGGTTCGCGGAT 207
consensus_5781#1      CGCGAATCAATCGACATTGCTACCACTCGAGCTGGTAGATAAATGCATCGGTTCGCGGAT 194
                      ************************************************ ***********

consensus_5781#0      ACACATCATCATGAAGAATGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTT 300
consensus_5781#2      ACACATCATCATGAAGAACGATAAGGAGATCGTGGGCACGCTGCTTGGATTCGACGACTT 267
consensus_5781#1      ACACATCATCATGAAGAACGATAAGGAGATTGTGGGCACGCTGCTTGGGTTCGACGACTT 254
                      ****************** *********** ***************** ***********

consensus_5781#0      CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT 360
consensus_5781#2      CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT 327
consensus_5781#1      CGTCAACATGCTGCTGGAGGACGTGACGGAGTACGAGAACACACCGGAAGGCCGGCGGAT 314
                      ************************************************************

consensus_5781#0      AACCAAACTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC 420
consensus_5781#2      AACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC 387
consensus_5781#1      AACCAAGCTCGACCAGATCCTGCTGAACGGCAACAACATTACGATGCTCGTGCCCGGTTC 374
                      ****** *****************************************************

consensus_5781#0      CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCGGCATATTTCCCCCTCCCTGCTG 480
consensus_5781#2      CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTG--- 444
consensus_5781#1      CAGCGGCGATCTTCCGGAAGCATCGTAAAGCGCTTGCAGCATATTTCCCCCTCCCTG--- 431
                      ************************************* *******************   

consensus_5781#0      TGGCTGCTGTGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAG 540
consensus_5781#2      ---------TGAATCGAGAAGAGTGTGAATTAATGTAATTGAAAACGCGAATAATGGAAG 495
consensus_5781#1      ---------TGAATCGAGAAGAGTGTGAATAAATGTAATTGAAAACGCGAAAAAAAAAAA 482
                               ********************* ******************** **   ** 

consensus_5781#0      AAGAGATAACTCGT--------------------- 554
consensus_5781#2      AAGAGATAACTCGTGAAACGT-------------- 516
consensus_5781#1      AAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGG 517
                      ** * * **   *