cluster # 5794

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Anopheles gambiae
cluster # 5794 cluster # 5794 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5794#0 length = 813 sequences # 3

consensus_5794#1 length = 456 sequences # 1

consensusID : consensus_5794#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 813
fasta sequence

                              [CCGGAATTATAGTAGTGTTTGTAAAATCAGCAAGCAGTAGAAGAAGTAAGGAAGAGGAGAGCATTAAGGTCGTAGAAGAAGTAAGACTATTTCACAAAAAAAATGTAGTGTGACTAAACGTAGCATATATAATTACTCTATCATGTTATCATGAACGTGTGTGTGTGTGTGCAAGGATAAGGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGAATACAAGTATGC-AAAAAAAAAGAATGATCCCATATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATATTATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAACAAAACACAATATATCTTATAAAGCAACAGTAGGAAGGAAGTGAATGCTAGAAATGCGAACAATGCGAGGAAAGAAGTAAAACGAATGAAGAAGAAGAAAAGGAAGTAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGTGTCGTAGCATGTATGTCGAAGGCGAGTAATTGATACATTATTTAAGCTTGTACTTGTTAAATGCGAGAACGCGCAGAACCATTT]

[+] EMBL BM646711             [CCGGAATTATAGTAGTGTTTGTAAAATCAGCAAGCAGTAGAAGAAGTAAGGAAGAGGAGAGCATTAAGGTCGTAGAAGAAGTAAGACTATTTCACAAAAAAAATGTAGTGTGACTAAACGTAGCATATATAATTACTCTATCATGTTATCATGAACGTGTGTGTGTGTGTGCAAGGATAAGGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGAATACAAGTATGC AAAAAAAAAGAATGATCCCATATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATGTATTATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAACAAAACACAATATATCTTATAAAGCAACAGTAGGAAGGAAGTGAATGCTAGAAATGCGAACAATGCGAGGAAAGAAGTAAAACGAATGAAGAAGAAGAAAAGGAAGTAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGA                                                                                                                                                               ]
[-] EMBL BM608327             [             AGTGTTTGTAAAATCAGCAAGCAGTAGAAGAAGTAAGGAAGAGGAGAGCATTAAGGTCGTAGAAGAAGTAAAACTATTTCACAAAAAAAATGTAGTGTGACTAAACGTAGCATATATAATTACTCTATCATGTTATCATGAACGTGTGTGTGTGTGTG AAGGATAAGGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGAATACAAGTATGC AAAAAAAAAGAATGATCCCATATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATATTATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAACAAAACACAATATATCTTATAAAGCAACAGTAGGAAGGAAGTGAATGCTAGAAATGCGAACAATGCGAGGAAAGAAGTAAAACGAATGAAGAAGAAGAAAAGGAAGTAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGA                                                                                                                                                         ]
[+] EMBL BM619613             [                                                                                                                                                                                                 ccgGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGAATACAAGTATGCAAAAAAAAAAGAATGATCCCATATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATATTATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAACAAGAAAAG     CAAAACACAATATATCTTATAAAGCAACAGTAGAAAGGAAGTGAATGCTAGTAATGCGAACAATGCGAGGGTGGAAGTGAAACGCATGAAGAAAAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGTGTCGTAGCATGTATGTCGAAGGCGAGTAATTGATACATTATTTAAGCTTGTACTTGTTAAATGCGAGAACGCGCAGAACCATTT]




>consensus_5794#0
CCGGAATTATAGTAGTGTTTGTAAAATCAGCAAGCAGTAGAAGAAGTAAGGAAGAGGAGA
GCATTAAGGTCGTAGAAGAAGTAAGACTATTTCACAAAAAAAATGTAGTGTGACTAAACG
TAGCATATATAATTACTCTATCATGTTATCATGAACGTGTGTGTGTGTGTGCAAGGATAA
GGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATG
TTAAAGGCAGTGTGCAGAATACAAGTATGCAAAAAAAAAGAATGATCCCATATATACACA
CATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATATTATATATAT
AAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACA
TTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACA
TATTAAAATTATACTTAAAACAAGAAAAGCAAAACAAAACACAATATATCTTATAAAGCA
ACAGTAGGAAGGAAGTGAATGCTAGAAATGCGAACAATGCGAGGAAAGAAGTAAAACGAA
TGAAGAAGAAGAAAAGGAAGTAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGA
AGAAGAAGTGTCGTAGCATGTATGTCGAAGGCGAGTAATTGATACATTATTTAAGCTTGT
ACTTGTTAAATGCGAGAACGCGCAGAACCATTT

consensusID : consensus_5794#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [CCGCCCACGCGTCCGGCGTGTGAAGGATAAGGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGTACCCAAGTATGCAAAATTAAAAAAAAGAAAGAAAGATCCCATATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATATTATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAACACAATATATCTTATAAAGCAACAGTAGAAAGGAAGTGAATGCTAGTAATGCGAACAATGCGAGGGTGGAAATGAAACGCATG]

[+] EMBL BM638065             [CCGCCCACGCGTCCGGCGTGTGAAGGATAAGGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGTACCCAAGTATGCAAAATTAAAAAAAAGAAAGAAAGATCCCATATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATATTATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAACACAATATATCTTATAAAGCAACAGTAGAAAGGAAGTGAATGCTAGTAATGCGAACAATGCGAGGGTGGAAATGAAACGCATG]




>consensus_5794#1
CCGCCCACGCGTCCGGCGTGTGAAGGATAAGGTTATGATAAAGAAAGGGAACGATATATA
GATTGTATGGAAGACATTGGGATAATAATGTTAAAGGCAGTGTGCAGTACCCAAGTATGC
AAAATTAAAAAAAAGAAAGAAAGATCCCATATATACACACATACACACTAGTAAATGAAT
ACGCAAAACCCTATACATATAAATATATATTATATATATAAAACGAGAAAGACGTTACAG
TGTGGCGAGTAGTGCAAAGTAAGCGAGTGCGCGCATACATTTGTTGAAAAATACAGATGA
AGCTGCAGCAAGCAAAAACGCAAAAAAGCAAACAAAACATATTAAAATTATACTTAAAAC
AAGAAAAGCAAAACACAATATATCTTATAAAGCAACAGTAGAAAGGAAGTGAATGCTAGT
AATGCGAACAATGCGAGGGTGGAAATGAAACGCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5794#0      CCGGAATTATAGTAGTGTTTGTAAAATCAGCAAGCAGTAGAAGAAGTAAGGAAGAGGAGA 60
consensus_5794#1      ------------------------------------------------------------
                                                                                  

consensus_5794#0      GCATTAAGGTCGTAGAAGAAGTAAGACTATTTCACAAAAAAAATGTAGTGTGACTAAACG 120
consensus_5794#1      ------------------------------------------------------------
                                                                                  

consensus_5794#0      TAGCATATATAATTACTCTATCATGTTATCATGAACGTGTGTGTGTGTGTGCAAGGATAA 180
consensus_5794#1      ----------------------------CCGCCCACGCGTCCG-GCGTGTG-AAGGATAA 30
                                                   *    *** **  * * ***** ********

consensus_5794#0      GGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATG 240
consensus_5794#1      GGTTATGATAAAGAAAGGGAACGATATATAGATTGTATGGAAGACATTGGGATAATAATG 90
                      ************************************************************

consensus_5794#0      TTAAAGGCAGTGTGCAGAATACAAGTATGCAAAA---------AAAAAGAATGATCCCAT 291
consensus_5794#1      TTAAAGGCAGTGTGCAGTACCCAAGTATGCAAAATTAAAAAAAAGAAAGAAAGATCCCAT 150
                      ***************** *  *************         * ****** ********

consensus_5794#0      ATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATAT 351
consensus_5794#1      ATATACACACATACACACTAGTAAATGAATACGCAAAACCCTATACATATAAATATATAT 210
                      ************************************************************

consensus_5794#0      TATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGC 411
consensus_5794#1      TATATATATAAAACGAGAAAGACGTTACAGTGTGGCGAGTAGTGCAAAGTAAGCGAGTGC 270
                      ************************************************************

consensus_5794#0      GCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCA 471
consensus_5794#1      GCGCATACATTTGTTGAAAAATACAGATGAAGCTGCAGCAAGCAAAAACGCAAAAAAGCA 330
                      ************************************************************

consensus_5794#0      AACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAACAAAACACAATATATCT 531
consensus_5794#1      AACAAAACATATTAAAATTATACTTAAAACAAGAAAAGCAAAA-----CACAATATATCT 385
                      *******************************************     ************

consensus_5794#0      TATAAAGCAACAGTAGGAAGGAAGTGAATGCTAGAAATGCGAACAATGCGAGGAAAGAAG 591
consensus_5794#1      TATAAAGCAACAGTAGAAAGGAAGTGAATGCTAGTAATGCGAACAATGCGAGGGTGGAAA 445
                      **************** ***************** ******************   *** 

consensus_5794#0      TAAAACGAATGAAGAAGAAGAAAAGGAAGTAGAAGAAGAAAAAGAAGAAGAAGAAGAAGA 651
consensus_5794#1      TGAAACGCATG------------------------------------------------- 456
                      * ***** ***                                                 

consensus_5794#0      AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGA 711
consensus_5794#1      ------------------------------------------------------------
                                                                                  

consensus_5794#0      AGAAGAAGAAGAAGAAGTGTCGTAGCATGTATGTCGAAGGCGAGTAATTGATACATTATT 771
consensus_5794#1      ------------------------------------------------------------
                                                                                  

consensus_5794#0      TAAGCTTGTACTTGTTAAATGCGAGAACGCGCAGAACCATTT 813
consensus_5794#1      ------------------------------------------