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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 955 fasta sequence
[CCCACGCGTCCGGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGAAAGGAAGAAGAATTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAACAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCAGTAACGGTGGATTAATCTAGACCACCACACCCAATACTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCCCGGACCCCATGTGCCCCATAGTGTAAGCGGAATGAGTTGTAAAATAGGGCAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAGGTTGTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACA------CAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACACTGGTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCGCGCGATTTTACACAGCGTTCAGTCCGGGTAGCAGTGCGGCAAAGACAAAACCAGTTTTTGACCAGTCTGCCTGCAGTCAAAAAGGAAAAGGACACAGACAGAGAGAAAAAGCTAGAGCACGAATAGGATTACAGCAGTAGATGCGCTGCACACAAGGTTCGGAAAATTTGACACTGTCCTTTTGTGTTGCAAAGTGCGAGAAGAGGCAGGGGAAAGAGGGCACCCTCCGAAAATGGTTGGTCGTGTGTGTGTGAGTGTTTTTTTTTTTGATAAATGTAAAGAAGTAAATAGATATGCAAGAAAGGGGA]
[+] EMBL BM654232 [CCCACGCGTCCGGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGAAAGGAAGAAGAATTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAACAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCAGTAACGGTGGATTAATCTAGACCACCACACCCAATACTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCCCGGACCCCATGTGCCCCATAGTGTAAGCGGAATGAGTTGTAAAATAGGGCAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAGGTTGTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACA CAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACACTGGTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTC ]
[+] EMBL BM609205 [ ccgcgAAACAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATTGATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCTGTTGCTGTGTCCCCGGACCCCATGTGCCCCATAGTGTAAGCGGAACGAGTTGTAAAATAGGACAGGAAGTAGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAGGTTGTG TTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCATCAGTTTGAATCCGGTGTGCACACAGCAGCAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACAC ACTGTCCCTGTTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCGCGCGATTTTACACAGCGTTCA ]
[+] EMBL BX625768 [ GTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCTCGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACA CAGCAGCAGCAGCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACACACTGTTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCTCGCGATTTTACACAGCGTTCAGTCCGGGTAGCAGTGCGGCAAAGACAAAACCAGTTTTTGACCAGTCTGCCTGCAGTCAAAAAGGAAAAGGACACAGACAGAGAGAAAAAGCTAGAGCACGAATAGGATTACAGCAGTAGATGCGCTGCACACAAGGTTCGGAAAATTTGACACTGTCCTTTTGTGTTGCAAAGTGCGAGAAGAGGCAGGGGAAAGAGGGCACCCTCCGAAAATGGTTGGTCGTGTGTGTGTGAGTGTTTTTTTTTTTGATAAATGTAAAGAAGTAAATAGATATGCAAGAAAGGGGA]
consensusID : consensus_5800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CTAAGAACTGTGGTGGTAGTGGGATGCATAATACCATCGGCGTGTGTACTACAAACGGTGCGATCGAGGGACAAAGTCCACAAACCGATGGTGGTCCACCCACGGAACGGTGCAACAATATTCCTTTATAGATGGGACGGATCCCTGGATCGTAATTTAATTTGTCTGATAAGTTCCCCCCCCCCCCCCCCCTTCCCATTGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGACAGGAACAAGATTTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATTGATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCTCGGACCCCATGTGCCCCATAGCGTAAGCGGAATGAGTTGTAAAATAGGACAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTAT]
[+] EMBL BX628047 [CTAAGAACTGTGGTGGTAGTGGGATGCATAATACCATCGGCGTGTGTACTACAAACGGTGCGATCGAGGGACAAAGTCCACAAACCGATGGTGGTCCACCCACGGAACGGTGCAACAATATTCCTTTATAGATGGGACGGATCCCTGGATCGTAATTTAATTTGTCTGATAAGTTCCCCCCCCCCCCCCCCCTTCCCATTGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCATCACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGACAGGAACAAGATTTATTTTGCTAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAGCTCATACACCCACCACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATTGATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTCCTCGGACCCCATGTGCCCCATAGCGTAAGCGGAATGAGTTGTAAAATAGGACAGGAAGTGGCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5800#0 ------------------------------------------------------------
consensus_5800#1 CTAAGAACTGTGGTGGTAGTGGGATGCATAATACCATCGGCGTGTGTACTACAAACGGTG 60
consensus_5800#0 ------------------------------------------------------------
consensus_5800#1 CGATCGAGGGACAAAGTCCACAAACCGATGGTGGTCCACCCACGGAACGGTGCAACAATA 120
consensus_5800#0 ------------------------------------------------------------
consensus_5800#1 TTCCTTTATAGATGGGACGGATCCCTGGATCGTAATTTAATTTGTCTGATAAGTTCCCCC 180
consensus_5800#0 --------CCCACGCGTCCGGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCAT 52
consensus_5800#1 CCCCCCCCCCCCTTCCCATTGCTGTTGCTGCTGCACACGCACACATTCGATTGTCCTCAT 240
*** * ****************************************
consensus_5800#0 CACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGAAAGGAAGAAGAATTATTTTGC 112
consensus_5800#1 CACCACACAACCAGCCACCATTCGCGTGCAGCGAAGCGACAGGAACAAGATTTATTTTGC 300
*************************************** ***** **** *********
consensus_5800#0 TAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGAAAACAAAGCTCATACACCCACC 172
consensus_5800#1 TAAACAAACGACTTTTTTTGTTCAGATAGGGAAAGAGA-----AAGCTCATACACCCACC 355
************************************** *****************
consensus_5800#0 ACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCAGTAACGGTGGATT 232
consensus_5800#1 ACCACTACCCCTCACTTTAAACACAACCTTCCAATTAGGTTCAAGCTGTAACGGTGGATT 415
********************************************** *************
consensus_5800#0 AATCTAGACCACCACACCCAATACTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTC 292
consensus_5800#1 GATCTAGACCACCACACCCAATCCTTGTCTGCAAGCCACAACGCATCCCGTTGCCGTGTC 475
********************* *************************************
consensus_5800#0 CCCGGACCCCATGTGCCCCATAGTGTAAGCGGAATGAGTTGTAAAATAGGGCAGGAAGTG 352
consensus_5800#1 CTCGGACCCCATGTGCCCCATAGCGTAAGCGGAATGAGTTGTAAAATAGGACAGGAAGTG 535
* ********************* ************************** *********
consensus_5800#0 GCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTATTGCGTCAAG 412
consensus_5800#1 GCTTTATGTACAGAATGCTTATATCTATGCGTATAGCTTTTTGTTCATTAT--------- 586
***************************************************
consensus_5800#0 GTTGTGTTTTTTTTAGCATCTGTGTGTACCACAGGATCCAAGGCGCAGTAACGCTTTCCT 472
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CGCGACGCTTCTGCGTTTTCTGATCAACAGTTTGAATCCGGTGTGCACACAGCAGCAGCA 532
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 GCAGCAGCATCGTGATTTTAAATTGCGGGCTGATCGTCCGCCAAAGACTGACACACACAC 592
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 ACTGGTGTCCCTATTGAAAAGTTCAAAATGATGCAAAACACGTTCCTCTCTCTCGCGCGA 652
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TTTTACACAGCGTTCAGTCCGGGTAGCAGTGCGGCAAAGACAAAACCAGTTTTTGACCAG 712
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TCTGCCTGCAGTCAAAAAGGAAAAGGACACAGACAGAGAGAAAAAGCTAGAGCACGAATA 772
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 GGATTACAGCAGTAGATGCGCTGCACACAAGGTTCGGAAAATTTGACACTGTCCTTTTGT 832
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 GTTGCAAAGTGCGAGAAGAGGCAGGGGAAAGAGGGCACCCTCCGAAAATGGTTGGTCGTG 892
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TGTGTGTGAGTGTTTTTTTTTTTGATAAATGTAAAGAAGTAAATAGATATGCAAGAAAGG 952
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 GGA 955
consensus_5800#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||