cluster # 5804

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Anopheles gambiae
cluster # 5804 cluster # 5804 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5804#0 length = 850 sequences # 3

consensus_5804#1 length = 397 sequences # 1

consensusID : consensus_5804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 850
fasta sequence

                              [GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGTCGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCGACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGG]

[+] EMBL BX624861             [GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGTCGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCGACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTT                                                                                               ]
[+] EMBL BX626538             [                                                                                                                CATCCGCGACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTT                                                                                               ]
[+] EMBL BM610247             [                                                                                                                                                                             ccgTGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAAGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGG]




>consensus_5804#0
GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGT
CGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCG
ACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCC
AATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTAT
GCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCC
ACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCA
CACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACC
ACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTT
GGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATAT
TGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCA
GGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTAT
GGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAA
ATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTC
TATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTT
CTCGGGTAGG

consensusID : consensus_5804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [TAACAACAAAAGGGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGTGCGTTTTTTTTAAATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAAGGACGACGAGAGTGAAAATGATAAACCTAAACGCGTTTACAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGGCCTAATATATATGTTTCTGGAATATATATGTATGGGCCGTCCCGAGTATGCGGTTGTATGCTTACGTATAATTTTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA]

[+] EMBL BM629882             [TAACAACAAAAGGGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGTGCGTTTTTTTTAAATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAAGGACGACGAGAGTGAAAATGATAAACCTAAACGCGTTTACAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGGCCTAATATATATGTTTCTGGAATATATATGTATGGGCCGTCCCGAGTATGCGGTTGTATGCTTACGTATAATTTTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA]




>consensus_5804#1
TAACAACAAAAGGGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGT
GCGTTTTTTTTAAATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAAGGACGACGAGA
GTGAAAATGATAAACCTAAACGCGTTTACAATTATAAATTTGCGAGCTAAATACTGCAAA
CAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGT
TAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGGCCTAATATATATG
TTTCTGGAATATATATGTATGGGCCGTCCCGAGTATGCGGTTGTATGCTTACGTATAATT
TTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5804#0      GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGT 60
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      CGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCG 120
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      ACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCC 180
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      AATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTAT 240
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      GCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCC 300
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      ACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCA 360
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      CACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACC 420
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      ACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTT 480
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      GGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATAT 540
consensus_5804#1      ------------------------------------------------TAACAACAAAAG 12
                                                                       ** **  * * 

consensus_5804#0      TGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCA 600
consensus_5804#1      GGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGTGCGTTTTTTTTA 72
                       *    * * ***  * * *    *  ** **       *      * **    **** *

consensus_5804#0      GGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTAT 660
consensus_5804#1      AATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAA---GGACGACGAGAG-------T 122
                          *   ** *       *  ** ** ***** **    *** *  * ***       *

consensus_5804#0      GGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAA 720
consensus_5804#1      GAAAATGATAA---------------------ACCTAAA----CGCGTTTACAATTATAA 157
                      * *   * * *                     *  ** *     ******* ********

consensus_5804#0      ATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTC 780
consensus_5804#1      ATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTC 217
                      ************************************************************

consensus_5804#0      TATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTT 840
consensus_5804#1      TATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTT 277
                      ************************************************************

consensus_5804#0      CTCGGGTAGG-------------------------------------------------- 850
consensus_5804#1      CTCGGGTAGGCCTAATATATATGTTTCTGGAATATATATGTATGGGCCGTCCCGAGTATG 337
                      **********                                                  

consensus_5804#0      ------------------------------------------------------------
consensus_5804#1      CGGTTGTATGCTTACGTATAATTTTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA 397