cluster # 581

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Anopheles gambiae
cluster # 581 cluster # 581 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_581#0 length = 687 sequences # 1

consensus_581#1 length = 683 sequences # 1

consensusID : consensus_581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGTAAGAGAGTGTGCGTGCGTGTATGTGTGTGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTATGCTTGTTATCTGTGTATCCGGCCGACTGACGAGGGGGCCGGACCACGGACCATTTCTCCCTCTACTGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACCCTCCAGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACAAGGGAAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCTGCCGTTGTTTAGTTTGGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCCGGGACGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATGGAGAGCGATCCCGCCTCACAACAGTAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCCGTAACATACGCGTCTCGTCTCAAATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTTACGTAATTATGGTCGACGGTTCGTCACCCGGGTCCTCGGCAGCGGCATTTGCTCAACAACCGACCCTATCCCAATAGCTACACCCACCGGT]

[+] EMBL BM621284             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGTAAGAGAGTGTGCGTGCGTGTATGTGTGTGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTATGCTTGTTATCTGTGTATCCGGCCGACTGACGAGGGGGCCGGACCACGGACCATTTCTCCCTCTACTGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACCCTCCAGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACAAGGGAAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCTGCCGTTGTTTAGTTTGGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCCGGGACGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATGGAGAGCGATCCCGCCTCACAACAGTAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCCGTAACATACGCGTCTCGTCTCAAATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTTACGTAATTATGGTCGACGGTTCGTCACCCGGGTCCTCGGCAGCGGCATTTGCTCAACAACCGACCCTATCCCAATAGCTACACCCACCGGT]




>consensus_581#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGTAAGAGAGTGTGCGTGCGTGTATGTGTG
TGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTATGCT
TGTTATCTGTGTATCCGGCCGACTGACGAGGGGGCCGGACCACGGACCATTTCTCCCTCT
ACTGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACCCTCC
AGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACAAGGG
AAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCTGCCG
TTGTTTAGTTTGGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCCGGGA
CGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATGGAGA
GCGATCCCGCCTCACAACAGTAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCCGTAA
CATACGCGTCTCGTCTCAAATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTTACGT
AATTATGGTCGACGGTTCGTCACCCGGGTCCTCGGCAGCGGCATTTGCTCAACAACCGAC
CCTATCCCAATAGCTACACCCACCGGT

consensusID : consensus_581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGGCAGCAGCGGCTACCATTACGCGCTGACGTGGTAAGAGAGTGTGCGTGCGTGTATGTGTGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTATGCTTGTTATCTGTGTATCCGGCTGACTGACGAGGGGGACCTAGGACCATGTCTCCCTCTACCGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACCCTCCAGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACAAGGGAAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCTGCCGTTGTTTAGTTTTGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCCGGGACGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATGGAGAGCGATCCCGCCTCACAACAGCAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCCGTAACGTACGCGTCTCGTCTCATATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTTACGGAATTATGGTCGACGGTTCGTCACCCCGGTCCCCGGCGGCGGCATTTGCTCAACAACCGACCCTTTCCCAATAGCTACACCCACCGGT]

[+] EMBL BM657076             [CCGGGCAGCAGCGGCTACCATTACGCGCTGACGTGGTAAGAGAGTGTGCGTGCGTGTATGTGTGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTATGCTTGTTATCTGTGTATCCGGCTGACTGACGAGGGGGACCTAGGACCATGTCTCCCTCTACCGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACCCTCCAGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACAAGGGAAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCTGCCGTTGTTTAGTTTTGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCCGGGACGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATGGAGAGCGATCCCGCCTCACAACAGCAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCCGTAACGTACGCGTCTCGTCTCATATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTTACGGAATTATGGTCGACGGTTCGTCACCCCGGTCCCCGGCGGCGGCATTTGCTCAACAACCGACCCTTTCCCAATAGCTACACCCACCGGT]




>consensus_581#1
CCGGGCAGCAGCGGCTACCATTACGCGCTGACGTGGTAAGAGAGTGTGCGTGCGTGTATG
TGTGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTATG
CTTGTTATCTGTGTATCCGGCTGACTGACGAGGGGGACCTAGGACCATGTCTCCCTCTAC
CGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACCCTCCAG
TGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACAAGGGAAAC
GTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCTGCCGTTGT
TTAGTTTTGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCCGGGACGAT
GATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATGGAGAGCGA
TCCCGCCTCACAACAGCAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCCGTAACGTA
CGCGTCTCGTCTCATATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTTACGGAATT
ATGGTCGACGGTTCGTCACCCCGGTCCCCGGCGGCGGCATTTGCTCAACAACCGACCCTT
TCCCAATAGCTACACCCACCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_581#0      CCGCGGACGCGTGGGCGG----ACGCGTGGGCGCGGTAAGAGAGTGTGCGTGCGTGTATG 56
consensus_581#1      CCGGGCAGCAGCGGCTACCATTACGCGCTGACGTGGTAAGAGAGTGTGCGTGCGTGTATG 60
                     *** * *   * **        *****  * ** **************************

consensus_581#0      TGTGTGTGCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTA 116
consensus_581#1      TGTGT--GCCTGTTGGGGTTTTTTTGCGTGTTTGTTATTACTGCCAACTACCGTCTGTTA 118
                     *****  *****************************************************

consensus_581#0      TGCTTGTTATCTGTGTATCCGGCCGACTGACGAGGGGGCCGGACCACGGACCATTTCTCC 176
consensus_581#1      TGCTTGTTATCTGTGTATCCGGCTGACTGACGAGGGGG----ACCTAGGACCATGTCTCC 174
                     *********************** **************    ***  ******* *****

consensus_581#0      CTCTACTGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACC 236
consensus_581#1      CTCTACCGCGGGACTGGTGGTGGTCATGTTTTATGCTTAAGTTTTCACGCTTCTCCCACC 234
                     ****** *****************************************************

consensus_581#0      CTCCAGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGAGACAGAGACCCCGTGACA 296
consensus_581#1      CTCCAGTGCACCGGAGGCAATTGTGAGAGAGAGAGAGAGAGA--CAGAGACCCCGTGACA 292
                     ******************************************  ****************

consensus_581#0      AGGGAAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCT 356
consensus_581#1      AGGGAAACGTGTTTGCTGTAGCTAGGCAGCAGCTAGGATGATCTGTTGTTCTTCACCGCT 352
                     ************************************************************

consensus_581#0      GCCGTTGTTTAGTTTGGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCC 416
consensus_581#1      GCCGTTGTTTAGTTTTGTGCGCCGTACCACCGTGCAACGGGAGAAGGAAAACTGACACCC 412
                     *************** ********************************************

consensus_581#0      GGGACGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATG 476
consensus_581#1      GGGACGATGATTTATGCTGCGTGCTGCGCGGGAAAGCGGACCACGGCACGGACATTGATG 472
                     ************************************************************

consensus_581#0      GAGAGCGATCCCGCCTCACAACAGTAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCC 536
consensus_581#1      GAGAGCGATCCCGCCTCACAACAGCAGCAGCAGCAGCAGCACTTGCAAAGAACCGAAGCC 532
                     ************************ ***********************************

consensus_581#0      GTAACATACGCGTCTCGTCTCAAATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTT 596
consensus_581#1      GTAACGTACGCGTCTCGTCTCATATGCTACAAAAGTGCCGGGAGAATGCTAACAAGTGTT 592
                     ***** **************** *************************************

consensus_581#0      ACGTAATTATGGTCGACGGTTCGTCACCCGGGTCCTCGGCAGCGGCATTTGCTCAACAAC 656
consensus_581#1      ACGGAATTATGGTCGACGGTTCGTCACCCCGGTCCCCGGCGGCGGCATTTGCTCAACAAC 652
                     *** ************************* ***** **** *******************

consensus_581#0      CGACCCTATCCCAATAGCTACACCCACCGGT 687
consensus_581#1      CGACCCTTTCCCAATAGCTACACCCACCGGT 683
                     ******* ***********************