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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1132 fasta sequence
[AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTCTACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTCAGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCACCAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATTCGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTGTGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTTTTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTG----AAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATCGATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTACCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG]
[+] EMBL CNS09KLK [AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTCTACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTCAGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCACCAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATTCGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTGTGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTTTTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAG GTGTTTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTG AAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATT ]
[-] EMBL CNS09KLL [ TGTGTGTTTTTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTCTACAGCCCCTGATCGCGTGTGAGTGAAAAAAATCGGTTCGGTTCGGTGTGGACGGGTTTCAGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCACCAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATTCGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTGTGATTACAAACTGACGCAAGGTGACGCGTTTTTTGGCCGTGCGGGACGTGCGTTTTTGTTTTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTG AAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATCGATCCCGCGGTCCCGCAATGGTCGACTA ]
[+] EMBL BM613412 [ ccgGATCAGGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTG TTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCC TTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATCAGTGTGCAATGTGAAGTGTGTTCCGAAATTGGTATATTGTGAAAAAAAAAACACAGTAAAATAAACGAAGAGTGGCATGTGCTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCTATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATCGATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTACCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG]
consensusID : consensus_5825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[CGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTCTAGCGAGAACCCATCCATCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTCT]
[+] EMBL CNS09G4M [CGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTCTAGCGAGAACCCATCCATCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5825#0 AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTT 60
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 TTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTT 120
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 GAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTC 180
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 TACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTC 240
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 AGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCAC 300
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 CAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATT 360
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 CGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTG 420
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 TGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTT 480
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 TTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGC 540
consensus_5825#1 -----------------------------------CGGACGCGTTTCGGGGTCCGTGTGC 25
* * **** *** * *****
consensus_5825#0 CTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCG 600
consensus_5825#1 GTGTATA-TATTCCCTACGTTTTCTCCCCTGTTTTGTTTG-------TGTGTTTGTTTCG 77
*** * * * * * * * ******* ** ******* *****
consensus_5825#0 TACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGT 660
consensus_5825#1 CAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGCAGT 137
* * * * ** * *** * ** * ******
consensus_5825#0 TGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAG 720
consensus_5825#1 TGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAG 197
************************************************************
consensus_5825#0 TGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGT 780
consensus_5825#1 TGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGT 257
************************************************************
consensus_5825#0 GTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGT 840
consensus_5825#1 GTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGT 317
************************************************************
consensus_5825#0 GTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCA 900
consensus_5825#1 GTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTCTAGCGAGAACCCATCCA 377
************************************* *********************
consensus_5825#0 TCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGT 960
consensus_5825#1 TCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTCT---------------- 421
************* ********************** *******
consensus_5825#0 GTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATC 1020
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 GATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTA 1080
consensus_5825#1 ------------------------------------------------------------
consensus_5825#0 CCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG 1132
consensus_5825#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||