cluster # 5830

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Anopheles gambiae
cluster # 5830 cluster # 5830 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5830#0 length = 702 sequences # 1

consensus_5830#1 length = 683 sequences # 2
consensus_5830#2 length = 506 sequences # 1

consensusID : consensus_5830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTTTTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAGTGTGAGACAGAGAGAGATAGAGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGAAA]

[+] EMBL BM622066             [CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTTTTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAGTGTGAGACAGAGAGAGATAGAGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGAAA]




>consensus_5830#0
CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGA
TTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATA
TTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTG
CTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGC
AGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACAC
AGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTTTTGAAGCAAAGTGTGT
AGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGC
GCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGCTGCTTCCCCGCGAAAGAAGG
AAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAG
CACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTG
ATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAGTGTGAGACAGAGAGAGATAG
AGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGAAA

consensusID : consensus_5830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence

                              [CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACACGAACGACACACACACACAGCAGGCCACAAAGTCGAATGGA--TGTGTGTGGTGTATCGGTTTTGTTGAAGCAAAGTGTGT---AGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGCTGTTCCG-TTTTCCTTTTTAAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAA------AGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAAAAAAAGAAAACCAATCGAAAGGCTAA]

[+] EMBL BM656733             [CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACACGAACGACACACACACACAGCAGGCCACAAAGTCGAATGGA  TGTGTGTGGTGTATCGGTTTTGTTGAAGCAAAGTGTGT   AGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGCTGTTCCG TTTTCCTTTTTAAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAA      AGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAAAA                        ]
[+] EMBL BM614319             [                                                                                                                                                                                                     ccgCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTT   TTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTT AAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAGAGAAAGAAAACCAATCGAAAGGCTAA]




>consensus_5830#1
CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGC
CAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAA
GATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTG
AGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGG
GGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACACGAACGACACACAC
ACACAGCAGGCCACAAAGTCGAATGGATGTGTGTGGTGTATCGGTTTTGTTGAAGCAAAG
TGTGTAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTC
GCGCTACGTCCCCAGCTGCTGTTCCGTTTTCCTTTTTAAAGCTGCTTCCCCGCGAAAGAA
GGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATG
AGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAG
TGATATTTGAAGAGAAAGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAAAAA
AAGAAAACCAATCGAAAGGCTAA

consensusID : consensus_5830#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACTCTCGGTTTTTTTTTCTCTTGATACTTGTGTCCCGGGTTTGACGTAAAAATGCTTACATGAAAATGTAAGATGTGGAAAGGAGAAGCGCAGGCAGGAGAAAGAAGAAGGGGATCGTGTACTGTAAAGGAAAAAAAAAAATCTATAAACTAATAGGTCTAACAAATATGAAACACAACAACACACACCTTACGACGTTTTTATTAAAGACTTAAGGGAGAGAGAAAGAGAGAGCGGAAAGGAAAAAGAGAGAGAGAGAGTGTGTTGCAAATGAGGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGGAAAGAGAATAAAATGAAACAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAAAAAGCAAACAGAGAGAGAGAGAGAAAGAGAGATGCAAAGAGTAAG]

[+] EMBL BM633122             [CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACTCTCGGTTTTTTTTTCTCTTGATACTTGTGTCCCGGGTTTGACGTAAAAATGCTTACATGAAAATGTAAGATGTGGAAAGGAGAAGCGCAGGCAGGAGAAAGAAGAAGGGGATCGTGTACTGTAAAGGAAAAAAAAAAATCTATAAACTAATAGGTCTAACAAATATGAAACACAACAACACACACCTTACGACGTTTTTATTAAAGACTTAAGGGAGAGAGAAAGAGAGAGCGGAAAGGAAAAAGAGAGAGAGAGAGTGTGTTGCAAATGAGGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGGAAAGAGAATAAAATGAAACAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAAAAAGCAAACAGAGAGAGAGAGAGAAAGAGAGATGCAAAGAGTAAG]




>consensus_5830#2
CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA
ACACGCTGCACGCCAGATTTCGACACAACACTCTCGGTTTTTTTTTCTCTTGATACTTGT
GTCCCGGGTTTGACGTAAAAATGCTTACATGAAAATGTAAGATGTGGAAAGGAGAAGCGC
AGGCAGGAGAAAGAAGAAGGGGATCGTGTACTGTAAAGGAAAAAAAAAAATCTATAAACT
AATAGGTCTAACAAATATGAAACACAACAACACACACCTTACGACGTTTTTATTAAAGAC
TTAAGGGAGAGAGAAAGAGAGAGCGGAAAGGAAAAAGAGAGAGAGAGAGTGTGTTGCAAA
TGAGGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGGAAAGAGAATAAAATGAAA
CAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAAAAAGCAAACAGAGAGAGAG
AGAGAAAGAGAGATGCAAAGAGTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5830#0      -----------------CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA 43
consensus_5830#1      -------------CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA 47
consensus_5830#2      CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA 60
                                         *****************************************

consensus_5830#0      ACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCA 103
consensus_5830#1      ACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCA 107
consensus_5830#2      ACACGCTGCACGCCAGATTTCGACACAACACT-----CTCGGTTTTTTTTTCTCTTGATA 115
                      *******************************      * *  *    * **        *

consensus_5830#0      CGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTG 163
consensus_5830#1      CGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTG 167
consensus_5830#2      CTTG-----------TGTCCCGGGTTTGACGT-------AAAAATGCTTACATGAAAATG 157
                      *  *           * * * *   ** *  *         ***  *     **  * **

consensus_5830#0      TCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCA 223
consensus_5830#1      TCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCA 227
consensus_5830#2      TAAGATGTG-GAAAGGAGAAGCGCAGGCAGGAGAAAG------AAGAAGGGGATCGTGTA 210
                      *    **** *  **     **    *  * *    *      *  * **  ****   *

consensus_5830#0      CCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACAC 283
consensus_5830#1      CCATCCGACGGGGGGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACAC 287
consensus_5830#2      CTGT---AAAGGAAAAAAAAAAATCTATAAACTAATAGGT--CTAACAAATATGAAACAC 265
                      *  *   *  **     *  *   ** *     * *  **   *      *   ******

consensus_5830#0      GAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGT 343
consensus_5830#1      GAACGACACACACACACAGCAGGCCACAAAGTCGAATGGAT--GTGTGTGGTGTATCGGT 345
consensus_5830#2      -AACAACACACAC-CTTACGACGTTTTTA---TTAAAGACT-----TAAGGGAGAGAG-- 313
                       *** ******** *  *  * *     *     ** *  *     *  **   *  *  

consensus_5830#0      TTTG---AAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTG 400
consensus_5830#1      TTTGTTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAG---CGAGCTCTTTTTTGTTGCTG 402
consensus_5830#2      -------AAAGAGAGAGCGGAAAGGAAAAAGAGAGAGA-GAGAG------TGTGTTGCAA 359
                             **  * ** * * * * *** ****   **    ***      * ******  

consensus_5830#0      TTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGC 460
consensus_5830#1      TTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGCTGTTCCGTTTTCCTTTTTAAAGC 462
consensus_5830#2      ATGA--GGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGG----------AAAGA 407
                       **   *   *** ** ***   * * *       *  *  * *            *** 

consensus_5830#0      TGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAA 520
consensus_5830#1      TGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAA 522
consensus_5830#2      GAATAAAATGAAACAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAA---AAA 464
                         *     *  * *   * * *  **  *      * *   *  *   *  *     **

consensus_5830#0      ACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGT 580
consensus_5830#1      ACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGT 582
consensus_5830#2      GCAAACAGAGAGAGAGAGAGAAAGAGAGATGCAAAGAGTAAG------------------ 506
                       * *     ** *    *** * *         ** ** **                   

consensus_5830#0      TGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAG 640
consensus_5830#1      TGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGCGCGAAAGAGTGTG 642
consensus_5830#2      ------------------------------------------------------------
                                                                                  

consensus_5830#0      TGTGAGACAGAGAGAGATAGAGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGA 700
consensus_5830#1      TGTGTGTGTGTGAAAAAAAAGAAAACCAATCGAAAGGCTAA------------------- 683
consensus_5830#2      ------------------------------------------------------------
                                                                                  

consensus_5830#0      AA 702
consensus_5830#1      --
consensus_5830#2      --