These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACCTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTATGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGTGCTGGAAA] [+] EMBL BM615581 [CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACCTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTATGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGTGCTGGAAA] [+] EMBL BM626819 [ ccgATTTTCTTCTATTGCCGCACAGTAAATTGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGACAAAAACTATGAAAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGATGCGAAGTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGCATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCATGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCGCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTGGACGAAAAGAAAAAAATACCGGAAAATGTGCGCACGAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAATGGGTTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTATGCATA ] consensusID : consensus_5836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [CAGATCGGCACGAGGTATAAGCAAAATATAACGGACTAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAAT] [+] EMBL BX467873 [CAGATCGGCACGAGGTATAAGCAAAATATAACGGACTAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAAT] consensusID : consensus_5836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GACCCACGCGTCCGCGGACGCGTGGGTGTGTTTTGATTCGGCAAATACATTTGAATATATGAAACAAATCAAATAAATATATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAAAAAAATCACAAATTTTGGGGAGGAATTATACAACATTGCTTATAAACCTGACCTAATTTTACGTGAGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCAAATCTGACAGATGGATGTTTTCTAAGCACAGTGTCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAAACGGACGCCGAT] [+] EMBL BM645028 [GACCCACGCGTCCGCGGACGCGTGGGTGTGTTTTGATTCGGCAAATACATTTGAATATATGAAACAAATCAAATAAATATATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAAAAAAATCACAAATTTTGGGGAGGAATTATACAACATTGCTTATAAACCTGACCTAATTTTACGTGAGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCAAATCTGACAGATGGATGTTTTCTAAGCACAGTGTCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAAACGGACGCCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5836#0 CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGC 60 consensus_5836#1 ------------------------------------------------------------ consensus_5836#2 ------------------------------------------------------------ consensus_5836#0 TAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGA-TAA 119 consensus_5836#1 ------------------CAGATCGGCACGA--GGTATAA-GCAAAATATAACGGACTAA 39 consensus_5836#2 --------------------------------------GACCCACGCGTCCGCGGACGCG 22 * ** **** consensus_5836#0 AAACTATGACAAGGTTCTGGAAACA---TTAAACGCATTGAACATAAGCGAAACGGACGC 176 consensus_5836#1 AAACTATGACAAGGTTCTGGAAACA---TTAAACGCATTGAACATAAGCGAAACGGACGC 96 consensus_5836#2 TGGGTGTGTTTTGATTCGGCAAATACATTTGAATATATGAAACA--AATCAAATAAATAT 80 * ** * *** * *** * ** ** ** **** * *** * consensus_5836#0 CGATTCGTTCCGGTGCGAA----GTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATG 232 consensus_5836#1 CGATTCGTTCCGGTGCGAA----GTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATG 152 consensus_5836#2 --ATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAAA-----AAAATCACAA-- 131 *** ** * ** * * ** * ** * *** * * * * consensus_5836#0 GTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTG 292 consensus_5836#1 GTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTG 212 consensus_5836#2 ATTTTGGGGAGGAAT---TATACAACATTGCTTATAAACCT---GACCTAATTTTACGTG 185 ** * ****** * ** ***** **** **** * ***** consensus_5836#0 C-CTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGA-ATTCCTTGA 350 consensus_5836#1 C-CTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGA-ATTCCTTGA 270 consensus_5836#2 AGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCA-AATCTGACAGATGGATGTTTTCTAA 244 * *** * ** * * * * ** * * * * **** ** * * consensus_5836#0 GCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAA 410 consensus_5836#1 GCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAA 330 consensus_5836#2 GCACAGTGTCGAG--CAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAAT-CGCTAA 301 ** *** **** * * * *** * * * * * ** consensus_5836#0 CTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCAT 470 consensus_5836#1 CTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCAT 390 consensus_5836#2 CTAGCA--AACTAATTCCTGTTCACCATGATTGATATA-AAGCAAAATATAACGGATAAA 358 ** * **** * * * * * * ****** * ** **** * consensus_5836#0 TACCTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGC 530 consensus_5836#1 TACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGC 450 consensus_5836#2 AAC-TATG-ACAAGGTTCTGGAAACATTAAA--CGCATTGAACATAAGCGA---AAACGG 411 ** ** *** * * ** ** * * *** **** * *** * consensus_5836#0 ATCGGCAATGATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGA 590 consensus_5836#1 ATCGGCAATGATTTTGTACAAT-------------------------------------- 472 consensus_5836#2 A-CGCCGAT--------------------------------------------------- 419 * ** * ** consensus_5836#0 CGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCC 650 consensus_5836#1 ------------------------------------------------------------ consensus_5836#2 ------------------------------------------------------------ consensus_5836#0 GGAATTCGTATGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGT 710 consensus_5836#1 ------------------------------------------------------------ consensus_5836#2 ------------------------------------------------------------ consensus_5836#0 GCTGGAAA 718 consensus_5836#1 -------- consensus_5836#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||