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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 803 fasta sequence
[CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATATTCATATTTTATGT-TTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA]
[+] EMBL BM618181 [CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACTAGTTGTTATATTCATATTTTATGTGTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCTCGAGTGGTGCAGCTTACAGAAGAGAACCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGA ]
[+] EMBL CNS08THU [ CTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATATTCATATTTTATGT TTATATCGGCGTTAGTTCGGACAGAATACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGATGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA]
[+] EMBL BM647494 [ ccgCTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTAGTTATATTCATATTTTATGT TTATATCGGCGTTAGTTCGAACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAAAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATG ]
consensusID : consensus_5845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC]
[+] EMBL BM641609 [CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5845#0 CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATA 60
consensus_5845#1 ------------------------------------------------------------
consensus_5845#0 TTCATATTTTATGTTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTA 120
consensus_5845#1 ------------------------------------------------------------
consensus_5845#0 TACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTT 180
consensus_5845#1 ------------------------------------------------------------
consensus_5845#0 AATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCT 240
consensus_5845#1 ------------------------------------------------------------
consensus_5845#0 ACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAG 300
consensus_5845#1 ------------------------------------------------------------
consensus_5845#0 ATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAA 360
consensus_5845#1 ------------------------------------------------------------
consensus_5845#0 AAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGAC 420
consensus_5845#1 --------------------------------------CCGGGCAAATCGAGTGGAGGAC 22
* *******************
consensus_5845#0 TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT 480
consensus_5845#1 TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT 82
************************************************************
consensus_5845#0 GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT 540
consensus_5845#1 GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT 142
************************************************************
consensus_5845#0 TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT 600
consensus_5845#1 TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT 202
************************************************************
consensus_5845#0 TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT 660
consensus_5845#1 TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT 262
************************************************************
consensus_5845#0 ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT 720
consensus_5845#1 ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT 322
************************************************************
consensus_5845#0 CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCG--------------------- 759
consensus_5845#1 CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAG 382
***************************************
consensus_5845#0 ---------------GCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA- 803
consensus_5845#1 GTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAG 442
********************************************
consensus_5845#0 ------------------------------------------------------------
consensus_5845#1 GCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGC 502
consensus_5845#0 ------------------------------------------------------------
consensus_5845#1 TACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATG 562
consensus_5845#0 ------------------------------------------------------------
consensus_5845#1 TCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCT 622
consensus_5845#0 --------------------
consensus_5845#1 GGATACGAAGATGAGGATGC 642
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||