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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 918 fasta sequence
[CCGGTAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTCTATAACCATTCCTATCATCTTTCTACATCATTCAGCAACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACAGCCACTGTTGTAATAATCCTTCCTTTGGCAGTAAAGTAACGTTTGCTTCCTTTTGTCCCATGGTCCTTTTCACTTTAGGCGCACAGTTTCACATCCCCCTGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGATGTAAGAGGTAGTGTTTCTTTCCTCCCTGTAGTTTTTAATTAGCAAACACCCATGTGCAAATGCAACACGTTCTGTAAATCGAACACTAAGGAAAAGGGATCAGGCACAGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACGTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTATAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGAACAGGGTAAATATATTGTGTAGCAGAGTAGGGAAACGGAAATGGCAAAAGTGCGAACAGTGCAGAAGTGTCCGTCGGATAGATGAAACTAATTTATATATTTGTAAGCATTTCTCAAAT]
[+] EMBL BM619704 [CCGGTAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTCTATAACCATTCCTATCATCTTTCTACATCATTCAGCAACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACAGCCACTGTTGTAATAATCCTTCCTTTGGCAGTAAAGTAACGTTTGCTTCCTTTTGTCCCATGGTCCTTTTCACTTTAGGCGCACAGTTTCACATCCCCCTGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGATGTAAGAGGTAGTGTTTCTTTCCTCCCTGTAGTTTTTAATTAGCAAACACCCATGTGCAAATGCAACACGTTCTGTAAATCGAACACTAAGGAAAAGGGATCAGGCACAGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACGTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTATAGAAACTAGAAGAT ]
[+] EMBL BX628799 [ ATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGAACAGGGTAAATATATTGTGTAGCAGAGTAGGGAAACGGAAATGGCAAAAGTGCGAACAGTGCAGAAGTGTCCGTCGGATAGATGAAACTAATTTATATATTTGTAAGCATTTCTCAAAT]
consensusID : consensus_5850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[AATATACTTAAGCATGCATAAGATGAATATGCATTTCTCCTACAGAGGTTTTGCTTTGCTCTTTCTTTTCTTGTTTTCTTTAGTTTGTTAGCACTGTAAAGGCAGGCCGGCGGGGATTTTATGGGTAAAGCGGCTGAACACACTTGCCCTTGAGTGATGTATTCCGTCGTAACTCATGATGCATCTGTTTGTTGTGTATTTATATAAGTATTGCTCTGCCTGTGCAAATTCGTTTTAATCACAGCGACCAGTAAGAAAGTGAACAGCCTGTGCTCGCTATCGCCACGAGAGGCAGACCACAGCGATGAGCAAGCAATTGCACACATTACACAATTCTAGAAACGCTCACAAGCAAAGTACAGCATATAAATGATGGGAAGAAACGACACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACGGCCACTGTTGTAATAATCCTTCCTTTGACAGTAGAGTAACGTTGGCTTTCTTCTGTCCCATGGTCCCTTTCACTTTGCGCGCACAGTTCCACATCCCCATGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGAT]
[+] EMBL BX628723 [AATATACTTAAGCATGCATAAGATGAATATGCATTTCTCCTACAGAGGTTTTGCTTTGCTCTTTCTTTTCTTGTTTTCTTTAGTTTGTTAGCACTGTAAAGGCAGGCCGGCGGGGATTTTATGGGTAAAGCGGCTGAACACACTTGCCCTTGAGTGATGTATTCCGTCGTAACTCATGATGCATCTGTTTGTTGTGTATTTATATAAGTATTGCTCTGCCTGTGCAAATTCGTTTTAATCACAGCGACCAGTAAGAAAGTGAACAGCCTGTGCTCGCTATCGCCACGAGAGGCAGACCACAGCGATGAGCAAGCAATTGCACACATTACACAATTCTAGAAACGCTCACAAGCAAAGTACAGCATATAAATGATGGGAAGAAACGACACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACGGCCACTGTTGTAATAATCCTTCCTTTGACAGTAGAGTAACGTTGGCTTTCTTCTGTCCCATGGTCCCTTTCACTTTGCGCGCACAGTTCCACATCCCCATGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGAT]
consensusID : consensus_5850#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[AGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTT]
[+] EMBL BX616081 [AGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5850#0 CCGGTAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTCTATAAC 60
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 CATTCCTATCATCTTTCTACATCATTCAGCAACAAGCTGCTGAACGTGAAAGAGATCTAT 120
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 TTATTAATGTTTAAATGCGCTGATATGAACAGCCACTGTTGTAATAATCCTTCCTTTGGC 180
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 AGTAAAGTAACGTTTGCTTCCTTTTGTCCCATGGTCCTTTTCACTTTAGGCGCACAGTTT 240
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 CACATCCCCCTGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTG 300
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 ATTGTCCTGTAGTGATGTAAGAGGTAGTGTTTCTTTCCTCCCTGTAGTTTTTAATTAGCA 360
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 AACACCCATGTGCAAATGCAACACGTTCTGTAAATCGAACACTAAGGAAAAGGGATCAGG 420
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 ------------------------------------------------------------
consensus_5850#0 CACAGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACGTAC 480
consensus_5850#2 ---AGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTAC 57
consensus_5850#1 ---AATATACTTAAG--CATGCATAAGATGAATATGCATTTCTCCTACAGAGGTTTTGCT 55
* *** * * * ** * ** *** ** * * * * ** *
consensus_5850#0 AGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTATAGAAACTAGAAGATG 540
consensus_5850#2 AGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATG 117
consensus_5850#1 TTGCTCTTTCTTTTCTTGTTTTCTTTAGTTTGTTAGCAC---TGTAAAGGCAGGCCGGCG 112
* * * * * ** * * ** * * * * * ** * * * * *
consensus_5850#0 GCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGA 600
consensus_5850#2 GCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGA 177
consensus_5850#1 GGGATTTTATGGGTAAAGCGGCTGAACACACTTGCCCTTGAGTGATGTATTCCGTCGTAA 172
* * * ** *** * ** * * * ** *** ** * * *
consensus_5850#0 AAAAAGAAAGAAAAGA-----AAATATATACGCAACAACCAATAATGGTGTGGGATTAAG 655
consensus_5850#2 AAAAAGAAAGAAAAGA-----AAATATATACGCAACAACCAATAATGGTGTGGGATTAAG 232
consensus_5850#1 CTCATGATGCATCTGTTTGTTGTGTATTTATATAAGTATTGCTCTGCCTGTGCAAATTCG 232
* ** * * *** ** ** * * **** * * *
consensus_5850#0 TGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAA-ATTACCACCATTTAGAA 714
consensus_5850#2 TGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAA-ATTACCACCATTTAGAA 291
consensus_5850#1 TTTTAATCACAGCGACCAGTAAGAAAGTGAACAGCCTGTGCTCGCTATCGCCACG-AGAG 291
* * * * * * ***** ** * * * ** * *** ***
consensus_5850#0 TGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCA 774
consensus_5850#2 TGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCA 351
consensus_5850#1 GCAGACCACAGCGATGAGCAAGCAATTGCACA--CATTACACAATTCTAGAAACGCT-CA 348
* * ** ** * *** * ** * * * * *** **
consensus_5850#0 GAAAAGTGAAACGACAGTGAAAAGAACAGGGTAAATATATTGTGTAGCAGAGTA-----G 829
consensus_5850#2 GAAAAGTGAAACGACAGTGAAAAGATAAAGGTAGA-ATGTTG-GTAGCAGTTTACTTACA 409
consensus_5850#1 CAAGCAAAGTACAGCATATAAATGATGGGAAGAAACGACACAAGCTGCTGAACGTGAAAG 408
** ** ** *** ** * * * ** *
consensus_5850#0 GGAAACGGAAATGGCAAAAGTGCGAACAGTGCAGAAGTGTCCGTCGGAT-----AGATGA 884
consensus_5850#2 GGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGG 469
consensus_5850#1 AGATCTATTTATTAATGTTTAAATGCGCTGATATGAACGGCCACTGTTGT--AATAATCC 466
* * * * * * **
consensus_5850#0 AACTAATTTAT--ATATTTGTA--AGCATTTCTCAAAT---------------------- 918
consensus_5850#2 CAACGATGCAGGGAAAATGATAT-AATGTTTGTTTGTTAGGTTGTTGTTT---------- 518
consensus_5850#1 TTCCTTTGACAGTAGAGTAACGTTGGCTTTCTTCTGTCCCATGGTCCCTTTCACTTTGCG 526
* * * * ** *
consensus_5850#0 ------------------------------------------------------------
consensus_5850#2 ------------------------------------------------------------
consensus_5850#1 CGCACAGTTCCACATCCCCATGAAATGCCCCATGCATACATATATACCTGCAAAACGCGG 586
consensus_5850#0 --------------------------
consensus_5850#2 --------------------------
consensus_5850#1 AGCTTGAGTGATTGTCCTGTAGTGAT 612
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||