cluster # 586

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Anopheles gambiae
cluster # 586 cluster # 586 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_586#0 length = 683 sequences # 1

consensus_586#1 length = 402 sequences # 1

consensusID : consensus_586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGCTCGCGTAGATCGTGCACGTCGGACAGTTGGAGACGCGCTGGTGCGTTCCGTGGACGGTGGTTCCTTCGCTTTGCAACCGCAACAACATTGTGTCAAGTGAAGTGTAGTGTCGAAAATCCGGGCTTGAAAGGGCTTCAAAAACCTGCTTGTGGGGGATTGTGGAAAATTACCTGTGCCTTGTGACGAAATTTTGTACCATCCTGTGCAGTGTGAAGATCGGCGGACCTGCTCCAACTACCTATGAGTAGCTGGTACACCATTGCATGCTGAACGATTAGGAACGTTATATTAACGTTCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGCATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCGCCGACCAGCATATGGTAGAGATCGATTAGCCAGCAGACCACCGATCCATCGTGTCCATCCGTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCGGCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCATCTGGAGGAGAAGAAATGCTTCCTTTGCGACACGCGCCGCGAGACGGAGAACGATCCGATGCGCAACCATCGGGATCGGTCAGA]

[+] EMBL BM624376             [CCGCTCGCGTAGATCGTGCACGTCGGACAGTTGGAGACGCGCTGGTGCGTTCCGTGGACGGTGGTTCCTTCGCTTTGCAACCGCAACAACATTGTGTCAAGTGAAGTGTAGTGTCGAAAATCCGGGCTTGAAAGGGCTTCAAAAACCTGCTTGTGGGGGATTGTGGAAAATTACCTGTGCCTTGTGACGAAATTTTGTACCATCCTGTGCAGTGTGAAGATCGGCGGACCTGCTCCAACTACCTATGAGTAGCTGGTACACCATTGCATGCTGAACGATTAGGAACGTTATATTAACGTTCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGCATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCGCCGACCAGCATATGGTAGAGATCGATTAGCCAGCAGACCACCGATCCATCGTGTCCATCCGTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCGGCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCATCTGGAGGAGAAGAAATGCTTCCTTTGCGACACGCGCCGCGAGACGGAGAACGATCCGATGCGCAACCATCGGGATCGGTCAGA]




>consensus_586#0
CCGCTCGCGTAGATCGTGCACGTCGGACAGTTGGAGACGCGCTGGTGCGTTCCGTGGACG
GTGGTTCCTTCGCTTTGCAACCGCAACAACATTGTGTCAAGTGAAGTGTAGTGTCGAAAA
TCCGGGCTTGAAAGGGCTTCAAAAACCTGCTTGTGGGGGATTGTGGAAAATTACCTGTGC
CTTGTGACGAAATTTTGTACCATCCTGTGCAGTGTGAAGATCGGCGGACCTGCTCCAACT
ACCTATGAGTAGCTGGTACACCATTGCATGCTGAACGATTAGGAACGTTATATTAACGTT
CCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGCA
TACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCGC
CGACCAGCATATGGTAGAGATCGATTAGCCAGCAGACCACCGATCCATCGTGTCCATCCG
TGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCGG
CTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCAT
CTGGAGGAGAAGAAATGCTTCCTTTGCGACACGCGCCGCGAGACGGAGAACGATCCGATG
CGCAACCATCGGGATCGGTCAGA

consensusID : consensus_586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [CCGGAAGGAAGTGTATTGGTCGTTTGCGTCTTGCTGGTGCTGTACTGCCATTATCTGTGATTAGGAACGTTATATTAACGTTCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGCATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCGCCGACCAGCATATGGTAGAGATCGATCCAGCAGACCACCGATCCATCGTGTCCATCCGTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCGGCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCATCTGGAGGAGAAGAAATGCTTCCT]

[+] EMBL BM621202             [CCGGAAGGAAGTGTATTGGTCGTTTGCGTCTTGCTGGTGCTGTACTGCCATTATCTGTGATTAGGAACGTTATATTAACGTTCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGCATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCGCCGACCAGCATATGGTAGAGATCGATCCAGCAGACCACCGATCCATCGTGTCCATCCGTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCGGCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCATCTGGAGGAGAAGAAATGCTTCCT]




>consensus_586#1
CCGGAAGGAAGTGTATTGGTCGTTTGCGTCTTGCTGGTGCTGTACTGCCATTATCTGTGA
TTAGGAACGTTATATTAACGTTCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAA
AATAGGATCGACATGTTTAGCATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAAT
CTTAAGTAGCAATGCACAGCGCCGACCAGCATATGGTAGAGATCGATCCAGCAGACCACC
GATCCATCGTGTCCATCCGTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCT
GATAGGGCGTGAGAACCGGCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACG
TTACTGCATCGTGTCCCATCTGGAGGAGAAGAAATGCTTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_586#0      CCGCTCGCGTAGATCGTGCACGTCGGACAGTTGGAGACGCGCTGGTGCGTTCCGTGGACG 60
consensus_586#1      ------------------------------------------------------------
                                                                                 

consensus_586#0      GTGGTTCCTTCGCTTTGCAACCGCAACAACATTGTGTCAAGTGAAGTGTAGTGTCGAAAA 120
consensus_586#1      ------------------------------------------------------------
                                                                                 

consensus_586#0      TCCGGGCTTGAAAGGGCTTCAAAAACCTGCTTGTGGGGGATTGTGGAAAATTACCTGTGC 180
consensus_586#1      ------------------------------------------------------------
                                                                                 

consensus_586#0      CTTGTGACGAAATTTTGTACCATCCTGTGCAGTGTGAAGATCGGCGGACCTGCTCCAACT 240
consensus_586#1      ---------------------------------------CCGGAAGGAAGTGTATTGGTC 21
                                                               *  ***  **        

consensus_586#0      ACCTATGAGTAGCTGGTACACCATTGC-ATGCTGAACGATTAGGAACGTTATATTAACGT 299
consensus_586#1      GTTTGCGTCTTGCTGGTGCTGTACTGCCATTATCTGTGATTAGGAACGTTATATTAACGT 81
                        *  *  * ****** *   * *** **  *    ***********************

consensus_586#0      TCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGC 359
consensus_586#1      TCCTACCCATGTATAGCTGGCCGCGGCAGCGATGGCCAAAATAGGATCGACATGTTTAGC 141
                     ************************************************************

consensus_586#0      ATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCG 419
consensus_586#1      ATACGTAGTTATTAATTTATTTATTTTCCATAGTCTAATCTTAAGTAGCAATGCACAGCG 201
                     ************************************************************

consensus_586#0      CCGACCAGCATATGGTAGAGATCGATTAGCCAGCAGACCACCGATCCATCGTGTCCATCC 479
consensus_586#1      CCGACCAGCATATGGTAGAGATCGAT---CCAGCAGACCACCGATCCATCGTGTCCATCC 258
                     **************************   *******************************

consensus_586#0      GTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCG 539
consensus_586#1      GTGTGAGCAGAGCTCGTGCTATCCGGCTACGGGCAACCTGCTGATAGGGCGTGAGAACCG 318
                     ************************************************************

consensus_586#0      GCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCA 599
consensus_586#1      GCTGGAAGCGTCGTCCACCTGCGGCACGGTACGACCGGAACGTTACTGCATCGTGTCCCA 378
                     ************************************************************

consensus_586#0      TCTGGAGGAGAAGAAATGCTTCCTTTGCGACACGCGCCGCGAGACGGAGAACGATCCGAT 659
consensus_586#1      TCTGGAGGAGAAGAAATGCTTCCT------------------------------------ 402
                     ************************                                    

consensus_586#0      GCGCAACCATCGGGATCGGTCAGA 683
consensus_586#1      ------------------------