cluster # 5874

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5874 cluster # 5874 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5874#0 length = 918 sequences # 3

consensus_5874#1 length = 94 sequences # 1

consensusID : consensus_5874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 918
fasta sequence

                              [GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGCAAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGCAAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACTGTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAACGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGATGATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCCAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGATTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAACAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGCATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCAAGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAATAAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACATTTTGAAACAGTTGAGTGT]

[+] EMBL BX608884             [GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGCAAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGCAAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACTGTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAACGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGATGATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCCAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGATTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAACAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGCATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCAAGAACAGCTC                                                                                                                                ]
[+] EMBL BM623031             [                                                                                                         ccgAAAGTAAGAAGCAAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACTGTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAACGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGATGATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCCAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGC                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX613430             [                                                                                                                                                                                                                                                                                                                                                                       CAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTTAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCATGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGATTTTGACATATCAACCTTGTTTTTATTAGCAAAAAGTTGACATTTAGAAAACGAGAAAACAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGCATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCAAGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAATAAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACATTTTGAAACAGTTGAGTGT]




>consensus_5874#0
GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGC
AAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGC
AAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACT
GTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAA
CGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGAT
GATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCC
AATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCA
GGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCAC
CTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTT
TAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGA
TTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAAC
AGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGC
ATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCA
AGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAAT
AAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACAT
TTTGAAACAGTTGAGTGT

consensusID : consensus_5874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence

                              [GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGGTTATGTTTTGTGTGTCTTGAACCACCTGATCGTTA]

[+] EMBL BM640455             [GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGGTTATGTTTTGTGTGTCTTGAACCACCTGATCGTTA]




>consensus_5874#1
GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGGT
TATGTTTTGTGTGTCTTGAACCACCTGATCGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5874#0      GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGC 60
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      AAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGC 120
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      AAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACT 180
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      GTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAA 240
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      CGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGAT 300
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      GATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCC 360
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      AATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGG-AATCTTGCATATCAGTTGATC 419
consensus_5874#1      -----------------------GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATC 37
                                             *************** *********************

consensus_5874#0      AGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCA 479
consensus_5874#1      AGGATGAGCTGAATTTTTGGGGTTATGTTTT--------------GTGTGTCTTGAACCA 83
                      ********************* *********              ***************

consensus_5874#0      CCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACT 539
consensus_5874#1      CCTGATCGTTA------------------------------------------------- 94
                      ***********                                                 

consensus_5874#0      TTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTG 599
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      ATTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAA 659
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      CAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATG 719
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      CATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGC 779
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      AAGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAA 839
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      TAAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACA 899
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      TTTTGAAACAGTTGAGTGT 918
consensus_5874#1      -------------------