cluster # 5880

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Anopheles gambiae
cluster # 5880 cluster # 5880 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5880#0 length = 836 sequences # 2

consensus_5880#1 length = 428 sequences # 1
consensus_5880#2 length = 268 sequences # 1

consensusID : consensus_5880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 836
fasta sequence

                              [TGCTTCGAGGGGCCCAAAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTGAAAACAAAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATGATAAAAAAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCAGTGTGAATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGAGGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGGTCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGTACATTTACTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCCCCCCCGATGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGCTGCTGTGTGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATCCCGCTTCGGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGTCCGGCCGTTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTAT]

[-] EMBL CNS08KHW             [TGCTTCGAGGGGCCCAAAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTGAAAACAAAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATGATAAAAAAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCAGTGTGAATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGAGGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGGTCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTAT                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX616782             [                                                                                                                                        CAATGTAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAGTGTGAACGAGAAACAAAAGTCCAAATAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTTGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAACACAGGGGAGGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACGACTACCATCAAAATTGGTTTTTGGTCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGTACATTTACTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCCCCCCCGATGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGCTGCTGTGTGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATCCCGCTTCGGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGTCCGGCCGTTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTAT]




>consensus_5880#0
TGCTTCGAGGGGCCCAAAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTGAAAACA
AAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATGATAAAA
AAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCAGTGTGA
ATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGG
AGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTG
TAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGAGGGTCGT
ATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGGTCGGATT
TTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGTACATTTA
CTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCCCCCCCGA
TGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGCTGCTGTG
TGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATCCCGCTTC
GGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGTCCGGCCG
TTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATCCGATTAA
ATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTAT

consensusID : consensus_5880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [GATCGCACGAGGGTGAAGTATGAAAAGAGAGAGAGAGACAGAAGTATGATAAAAGAGAGAGAGAGAGAAGTATGAAAAAGTATCTAAATTTGATTACGGGCTAGTAGTGATCGTTTATCCTAATTTTGTTTACCTTTCTCTTCCCTCTCACACACACACACACTAGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTATTTGGCAGGCTGCGAAAGTAAGCCGAGGNTGTTGTGTCGAGAANAAAGAGGGTAAAAGAATAANTAGCTAAACAAAATTTAACCAGTGAACCACGAAATGGGCTGATTGAACGATAAAATGCGATAAATACGGGAAGAGTAAACTTGCAGAACACGCACTGCACAAGCATGCGTACCG]

[+] EMBL BX466559             [GATCGCACGAGGGTGAAGTATGAAAAGAGAGAGAGAGACAGAAGTATGATAAAAGAGAGAGAGAGAGAAGTATGAAAAAGTATCTAAATTTGATTACGGGCTAGTAGTGATCGTTTATCCTAATTTTGTTTACCTTTCTCTTCCCTCTCACACACACACACACTAGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTATTTGGCAGGCTGCGAAAGTAAGCCGAGGNTGTTGTGTCGAGAANAAAGAGGGTAAAAGAATAANTAGCTAAACAAAATTTAACCAGTGAACCACGAAATGGGCTGATTGAACGATAAAATGCGATAAATACGGGAAGAGTAAACTTGCAGAACACGCACTGCACAAGCATGCGTACCG]




>consensus_5880#1
GATCGCACGAGGGTGAAGTATGAAAAGAGAGAGAGAGACAGAAGTATGATAAAAGAGAGA
GAGAGAGAAGTATGAAAAAGTATCTAAATTTGATTACGGGCTAGTAGTGATCGTTTATCC
TAATTTTGTTTACCTTTCTCTTCCCTCTCACACACACACACACTAGGATGGGGAAAACAA
AACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGC
AATTGCATTATTTGGCAGGCTGCGAAAGTAAGCCGAGGNTGTTGTGTCGAGAANAAAGAG
GGTAAAAGAATAANTAGCTAAACAAAATTTAACCAGTGAACCACGAAATGGGCTGATTGA
ACGATAAAATGCGATAAATACGGGAAGAGTAAACTTGCAGAACACGCACTGCACAAGCAT
GCGTACCG

consensusID : consensus_5880#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence

                              [CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCTCTCTCTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATGATAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAGTGTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTG]

[+] EMBL BM624415             [CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCTCTCTCTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATGATAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAGTGTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTG]




>consensus_5880#2
CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCTCTCT
CTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATGA
TAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAG
TGTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCG
CTCGGAGAGAGAACTGAGTAAACAGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5880#0      ----TGCTTCGAGGGGCCCA--AAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTG 54
consensus_5880#2      CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCT-CTC 59
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      AAAACAAAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATG 114
consensus_5880#2      TCTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATG 119
consensus_5880#1      ----------GATCGCACGAGGG-TGAAGTATGAAAAGAGAGAGAGAG-ACAGAAGTATG 48
                                       *           *                   *  *    ***

consensus_5880#0      ATAAAAAAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCA 174
consensus_5880#2      ATAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCA 179
consensus_5880#1      ATAAAAGAGAG----AGAGAGAGAA-GTATGAAAAAGTATCTAAATTTGATTACGGGCTA 103
                      ****** * *     *** * * ** * *   *****   *   **        * *  *

consensus_5880#0      GT-GTGAATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGC 233
consensus_5880#2      GT-GTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGC 238
consensus_5880#1      GTAGTGATCGTTTATCCTAATTTT---GTTTACCTTTCTCTTCCCTCTCACACACACACA 160
                      ** ****  *   * *  **       *    * ** * * ****   * *     **  

consensus_5880#0      CGCTCGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTA 293
consensus_5880#2      CGCTCGGAGAGAGAACTGAGTAAACAGCTG------------------------------ 268
consensus_5880#1      CACTAGGATGGGGAAAACAAAACAAATCCGAT-TAAATTCTAAATTTAACGACTCAA--A 217
                      * ** ***  * ***   *  * * * * *                              

consensus_5880#0      GGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGA 353
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      GTCATCGTAGCGAATGTTAGTGCAATTGCATTATTTGGCAG-GCTGCGAAAGTAAGCCGA 276
                                                                                  

consensus_5880#0      GGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGG 413
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      GGNTGTTGTGTCGAGAANAAAGAGGGTAAAAGAATAANTAGC--TAAACAAAATTTAACC 334
                                                                                  

consensus_5880#0      TCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGT 473
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      AGTGAACCACGAAATGGGCTGATTGAACGATAAAATGCGATAAATACGGGA--AGAGTAA 392
                                                                                  

consensus_5880#0      ACATTTACTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCC 533
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      ACTTGCAGAACACGCACTGCACAAGCATGCGTACCG------------------------ 428
                                                                                  

consensus_5880#0      CCCCCGATGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGC 593
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      TGCTGTGTGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATC 653
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      CCGCTTCGGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGT 713
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      CCGGCCGTTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATC 773
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      CGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCAT 833
consensus_5880#2      ------------------------------------------------------------
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      TAT 836
consensus_5880#2      ---
consensus_5880#1      ---