cluster # 5884

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Anopheles gambiae
cluster # 5884 cluster # 5884 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5884#0 length = 1496 sequences # 3

consensus_5884#1 length = 633 sequences # 1

consensusID : consensus_5884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1496
fasta sequence

                              [CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATTTCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAAGAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTCGCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAGGAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTATGTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATCTTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAGAGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGACAAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAACAAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACGACAAGCTCGGCCTGAACAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTTCCGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGAGTCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCAGAAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCAAGAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCACACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG]

[+] EMBL BM625215             [CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATTTCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAAGAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTCGCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAGGAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTATGTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATCTTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAGAGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGACAAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAACAAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACGACAAGCTCGGCCTGAACAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX617969             [                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGAGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGACAAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAACAAGAACTTGGACTTCTTTCAGCGTCGCCAACAAGAGGTGGACGACAAGCTCGGCCTGAACAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTTCCGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGG                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX628734             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGAGTCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCAGAAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCAAGAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCACACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG]




>consensus_5884#0
CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATT
TCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAA
GAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTC
GCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAG
GAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTAT
GTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATC
TTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAG
AGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGAC
AAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAAC
AAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACGACAAGCTCGGCCTGAAC
AGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATC
AACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGATC
GGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCG
ATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTTC
CGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAAG
CTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTAC
CGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTAT
CTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAG
GCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGT
GACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGC
AGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGAG
TCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCAG
AAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCAA
GAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCAC
ACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG

consensusID : consensus_5884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCCACGCGTCCGCTCGGTCTGAACAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTGCTGGAGTCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTAGTCAGGGCAAGTTCCGGAAGATGTTTGAGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACC]

[+] EMBL BM641668             [CCCACGCGTCCGCTCGGTCTGAACAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTGCTGGAGTCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTAGTCAGGGCAAGTTCCGGAAGATGTTTGAGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACC]




>consensus_5884#1
CCCACGCGTCCGCTCGGTCTGAACAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGC
TACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTG
CTGGAGTCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGC
TTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATT
AACCTGTTTAGTCAGGGCAAGTTCCGGAAGATGTTTGAGGTTGACATCTACGATTGGGAC
CATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAG
AAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCAC
AACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAG
GTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATG
TGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCG
AGCGTGATGACGATCAATCGACGCAGCGTTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5884#0      CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATT 60
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      TCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAA 120
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      GAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTC 180
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      GCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAG 240
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      GAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTAT 300
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      GTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATC 360
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      TTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAG 420
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      AGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGAC 480
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      AAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAAC 540
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      AAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACG-ACAAGCTCGGCCTGAA 599
consensus_5884#1      -------------------------------------CCCACGCGTCCGCTCGGTCTGAA 23
                                                              ***     ****** *****

consensus_5884#0      CAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGAT 659
consensus_5884#1      CAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGAT 83
                      ********************* **************************************

consensus_5884#0      CAACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGAT 719
consensus_5884#1      CAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTGCTGGAGTCGGTCAAGGACGAGAT 143
                      *************** ************************** *****************

consensus_5884#0      CGGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGC 779
consensus_5884#1      CGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGC 203
                      ********************* **************************************

consensus_5884#0      GATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTT 839
consensus_5884#1      GATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTAGTCAGGGCAAGTT 263
                      *********************************************** ************

consensus_5884#0      CCGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAA 899
consensus_5884#1      CCGGAAGATGTTTGAGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAA 323
                      ************ ********************************** ************

consensus_5884#0      GCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTA 959
consensus_5884#1      GCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTA 383
                      ************************************************************

consensus_5884#0      CCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTA 1019
consensus_5884#1      CCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTA 443
                      ************************************************************

consensus_5884#0      TCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGA 1079
consensus_5884#1      TCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGA 503
                      ************************************************************

consensus_5884#0      GGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCG 1139
consensus_5884#1      GGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCG 563
                      ************************************************************

consensus_5884#0      TGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACG 1199
consensus_5884#1      TGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACG 623
                      ************************************************************

consensus_5884#0      CAGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGA 1259
consensus_5884#1      CAGCGTTACC-------------------------------------------------- 633
                      **********                                                  

consensus_5884#0      GTCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCA 1319
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      GAAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCA 1379
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      AGAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCA 1439
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      CACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG 1496
consensus_5884#1      ---------------------------------------------------------