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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 765 fasta sequence
[CCGGTGGTGAACGTGTCGCAAATTAAAGCGAAATTAACCCCACAGCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACAATATTCCAGATTTTTACCAACGTAAAATTCGTCCAGGATCCTGCATTGGGTGTTTCGTGATGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCTTGGCGATCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGTCATACTACCGGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATTATCTCACTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTTTGATACCGCTGAGTTTTGCATGTGTGCGGCTGGCGGGCGTTCAGCCAAACGCCACACGACCCATTGCAGANGTTTACNGACGGCTGCAGGAGCTTCTTGAAGCAGCATCATTTTACGTGCGATTCATCCAGCGCCCCTGA]
[+] EMBL BM649315 [CCGGTGGTGAACGTGTCGCAAATTAAAGCGAAATTAACCCCACAGCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACAATATTCCAGATTTTTACCAACGTAAAATTCGTCCAGGATCCTGCATTGGGTGTTTCGTGATGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCTTGGCGATCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGTCATACTACCGGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATTATCTCACTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTTTGATACCGCTGAGTTTTGCATGTGTGCGGCTGGCGGGCGTTC ]
[+] EMBL BX627442 [ GCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACAATATTCCAGATTTTTACCAACGTAAAATTCGTCCAGGATCCTGCATTGGGTGTTTCGTGATGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCTTGGCGATCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGTCATACTACCGGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATTATCTCACTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTTTGATACCGCTGAGTTTTGCATGTGTGCGGCTGGCGGGCGTTCAGCCAAACGCCACACGACCCATTGCAGANGTTTACNGACGGCTGCAGGAGCTTCTTGAAGCAGCATCATTTTACGTGCGATTCATCCAGCGCCCCTGA]
consensusID : consensus_5891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[AATTAACCCCACAGCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACAATATTCCAGATTTTTACCAACGTAAAATTCGGCATTGGGTGTTTCGTGATGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCCAAACGAGTCAAGCCAAACGAGGCTTGGCGAGCAAGGGAAAGATAGCAACGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGACATACTACCGGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATTATCACAGTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTTTGATACCGCTGAGTTATGCATGTGTGCNGCTGGCGGGCGTTCAGCCAAACGCCACACG]
[+] EMBL BX620465 [AATTAACCCCACAGCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACAATATTCCAGATTTTTACCAACGTAAAATTCGGCATTGGGTGTTTCGTGATGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCCAAACGAGTCAAGCCAAACGAGGCTTGGCGAGCAAGGGAAAGATAGCAACGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGACATACTACCGGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATTATCACAGTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTTTGATACCGCTGAGTTATGCATGTGTGCNGCTGGCGGGCGTTCAGCCAAACGCCACACG]
consensusID : consensus_5891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[CCGCGATCACAAAGGTGGCCTGGCGGCATTCGGGAACGCATGCTATTGTTCGTATCATATTCGCAGTAACTTTCGTGGTGAACGTGTCGCAAATTAAAGCGAAATTAACCCCACAGCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTAAAAAACGGAGACAACGCGGTACAATATTCCAGATTTTTACCAACGTAAAATTCGTACAGGATCCTGCATTGGGTGTTTCGTATTGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCCAAACGAGTCAAGCCAAACGAGGCTTGGCGAGCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTGAGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGCGGATGGGACATACTACCGGGCAATCATAGAGA]
[+] EMBL BM627767 [CCGCGATCACAAAGGTGGCCTGGCGGCATTCGGGAACGCATGCTATTGTTCGTATCATATTCGCAGTAACTTTCGTGGTGAACGTGTCGCAAATTAAAGCGAAATTAACCCCACAGCGTTTCGCAACGGAAGTGATCAGACACTGGGAAGCATATTAAAAAACGGAGACAACGCGGTACAATATTCCAGATTTTTACCAACGTAAAATTCGTACAGGATCCTGCATTGGGTGTTTCGTATTGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCCAAACGAGTCAAGCCAAACGAGGCTTGGCGAGCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGAGGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGCCGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTGAGCAGCAGGTGGATTGGTTGCACCAGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGGTTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGCGGATGGGACATACTACCGGGCAATCATAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5891#0 ------------------------------------------------------------
consensus_5891#1 ------------------------------------------------------------
consensus_5891#2 CCGCGATCACAAAGGTGGCCTGGCGGCATTCGGGAACGCATGCTATTGTTCGTATCATAT 60
consensus_5891#0 -----------CCGGTGGTGAACGTGTCGCAAATTAAAGCGAAATTAACCCCACAGCGTT 49
consensus_5891#1 ------------------------------------------AATTAACCCCACAGCGTT 18
consensus_5891#2 TCGCAGTAACTTTCGTGGTGAACGTGTCGCAAATTAAAGCGAAATTAACCCCACAGCGTT 120
******************
consensus_5891#0 TCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACA 109
consensus_5891#1 TCGCAACGGAAGTGATCAGACACTGGGAAGCATATTGAAAAACGGAGACAACGCGGAACA 78
consensus_5891#2 TCGCAACGGAAGTGATCAGACACTGGGAAGCATATTAAAAAACGGAGACAACGCGGTACA 180
************************************ ******************* ***
consensus_5891#0 ATATTCCAGATTTTTACCAACGTAAAATTCGTCCAGGATCCTGCATTGGGTGTTTCGTGA 169
consensus_5891#1 ATATTCCAGATTTTTACCAACGTAAAATTCG-----------GCATTGGGTGTTTCGTGA 127
consensus_5891#2 ATATTCCAGATTTTTACCAACGTAAAATTCGTACAGGATCCTGCATTGGGTGTTTCGTAT 240
******************************* ****************
consensus_5891#0 TGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGC---------- 219
consensus_5891#1 TGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCCAAACGAGTC 187
consensus_5891#2 TGATGATGCAGAACGAGTCCACTGCGGCCATGACCTCGGATGCGGGAGGCCAAACGAGTC 300
**************************************************
consensus_5891#0 --------------TTGGCGATCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGA 265
consensus_5891#1 AAGCCAAACGAGGCTTGGCGAGCAAGGGAAAGATAGCAACGCATTACCCCTACCAAATGA 247
consensus_5891#2 AAGCCAAACGAGGCTTGGCGAGCAAGGGAAAGATAGCAGCGCATTACCCCTACCAAATGA 360
******* **************** *********************
consensus_5891#0 GGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGC 325
consensus_5891#1 GGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGC 307
consensus_5891#2 GGATTGAACCGCGGGCAGAAGGGTTCCTTGCTGATATTGTGTTCTGTTGTATATGTCAGC 420
************************************************************
consensus_5891#0 CGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACC 385
consensus_5891#1 CGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTTCGCAGCAGGTGGATTGGTTGCACC 367
consensus_5891#2 CGGCCCTCTACATCCGTCCCTTTGTGACGGAATTTGAGCAGCAGGTGGATTGGTTGCACC 480
*********************************** ***********************
consensus_5891#0 AGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGG 445
consensus_5891#1 AGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGG 427
consensus_5891#2 AGAATGTGCAGGCCGTGGCAGCGTCCCAGATGCAGGCAGCAGGCGAGCAGGAGCAGGCGG 540
************************************************************
consensus_5891#0 TTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGTCATACTACC 505
consensus_5891#1 TTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGAGGATGGGACATACTACC 487
consensus_5891#2 TTATGTTCGTGGCGGGTGCACCATGCCTTGCTCGGTACAGTGCGGATGGGACATACTACC 600
****************************************** ******* *********
consensus_5891#0 GGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATT 565
consensus_5891#1 GGGCAATCATAGAGAAGGTGGACGATGTGCAAGATGCCGTCCATGTCCTGTACGTGGATT 547
consensus_5891#2 GGGCAATCATAGAGA--------------------------------------------- 615
***************
consensus_5891#0 ATCTCACTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTT 625
consensus_5891#1 ATCACAGTAGGGAAATTTTGCCGAAGAGGGATATCTGCGAGTGCCCGCTAGAATTGCGTT 607
consensus_5891#2 ------------------------------------------------------------
consensus_5891#0 TGATACCGCTGAGTTTTGCATGTGTGCGGCTGGCGGGCGTTCAGCCAAACGCCACACGAC 685
consensus_5891#1 TGATACCGCTGAGTTATGCATGTGTGCNGCTGGCGGGCGTTCAGCCAAACGCCACACG-- 665
consensus_5891#2 ------------------------------------------------------------
consensus_5891#0 CCATTGCAGANGTTTACNGACGGCTGCAGGAGCTTCTTGAAGCAGCATCATTTTACGTGC 745
consensus_5891#1 ------------------------------------------------------------
consensus_5891#2 ------------------------------------------------------------
consensus_5891#0 GATTCATCCAGCGCCCCTGA 765
consensus_5891#1 --------------------
consensus_5891#2 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||