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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 808 fasta sequence
[CCGCCCACGCGTCCGAACAAAACAAACTACCGCCATGTCTGTACTGCGGACACTGACACTGTTGGCCATCGGTGCCACTGTCGTGCTGGCCCAGCGTCGCCTAGCCCTGCCAGATCCCCGAAGCTGCGCCAACCGTGTACGACATGCGACGTACCGTGATGCCCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGACCGACCACGCAGCGCAACACTGGCGACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCAT]
[+] EMBL BM651822 [CCGCCCACGCGTCCGAACAAAACAAACTACCGCCATGTCTGTACTGCGGACACTGACACTGTTGGCCATCGGTGCCACTGTCGTGCTGGCCCAGCGTCGCCTAGCCCTGCCAGATCCCCGAAGCTGCGCCAACCGTGTACGACATGCGACGTACCGTGATGCCCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTG ]
[+] EMBL BX616528 [ GGCCCAGCGTCGCCTAACCCTGCCAGATCCCCGAAGCTGCGCCAACCGTGTACGACATGCGACGTACCGTGATGCTCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCGCCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGTAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGACCGACCACGCAGCGCAACACTGGCGACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGG ]
[+] EMBL BM649270 [ ccgCCGTGATGCCCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGCCCGACCACGCAGCGCAACACTGGCGACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCAT]
consensusID : consensus_5901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCATTCGTTAGTGCAGTAGCGAGACACGTTACTGCATTTTTGTGTGTATGAATCGCTCAAGAGAAAGGGAAAGAGAGATGAAGGTTCAGCATTACTATTCCACCGTCGATCGGGAATGATCAGTTGATTGGTTTCGTTTCGATCTGTAACGTACAAGCCAGCAAACGCCACCTTCCCTGAGTAACTGAGTAATGCGACTAAAATGCTACTAAAGCAGCACAACGCACCACCGCAGCAGTTTCGGAGCCGGCCAAGGCAGTTTGTTCGGTCGGGCCAAGCGTTGTATGGGCTTCGTGTGTGTGTGTTTTTTTTATGTAGATCTGTTTTGTATTGCAACTCTGTTTAATTTCTATTTATTGTA]
[+] EMBL BM631413 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCATTCGTTAGTGCAGTAGCGAGACACGTTACTGCATTTTTGTGTGTATGAATCGCTCAAGAGAAAGGGAAAGAGAGATGAAGGTTCAGCATTACTATTCCACCGTCGATCGGGAATGATCAGTTGATTGGTTTCGTTTCGATCTGTAACGTACAAGCCAGCAAACGCCACCTTCCCTGAGTAACTGAGTAATGCGACTAAAATGCTACTAAAGCAGCACAACGCACCACCGCAGCAGTTTCGGAGCCGGCCAAGGCAGTTTGTTCGGTCGGGCCAAGCGTTGTATGGGCTTCGTGTGTGTGTGTTTTTTTTATGTAGATCTGTTTTGTATTGCAACTCTGTTTAATTTCTATTTATTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5901#0 CCGCCCACGCGTCCGA--ACAAAACAAACTACCGCCATGTCTGTACTGCGGACACTGACA 58
consensus_5901#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGG-ACAACCGTGAGGCGGCTCAGGGTA 59
*************** ** * * **** * * ** **** * *
consensus_5901#0 CTGTTGG-CCATCGGTGCCACTGTCGTGCTGGCCCAGCGTCGCCTAGCCCTGCCAGATCC 117
consensus_5901#1 ACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGG---C 116
* ** * * ** * * * * * * ** ** * *
consensus_5901#0 CCGAAGCTGCGC-CAACCGTGTACGACATGCGACGTACCGTGATGCCCGCGGAGTAGCGC 176
consensus_5901#1 ACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGA 176
*** * *** *** * * * ** * *** * ** * *
consensus_5901#0 ATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCG 236
consensus_5901#1 ACTTTGTTCGCTCCCGC--AACCCGGGCATCCGTCTGTA-----AGGATGGAGTGTCTCG 229
* * ** * ** * *** * * * * * * ** ** ****
consensus_5901#0 ATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGG 296
consensus_5901#1 CAGT--GGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACAC-ATG 286
* * ** * * * * ** **** ** **** * ** * * * *
consensus_5901#0 AGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTG 356
consensus_5901#1 AGAAGATGCGCATCCC-TTGCACACCGGAACAGAAAACAT------CATTCGTTAGTGCA 339
**** * **** ** ** ** * *** * *** * **
consensus_5901#0 GGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACG 416
consensus_5901#1 GTAGCGAGAC--ACGTTACTGCAT----TTTTGTGTGTATGAATCGCTCAA--GAGAAAG 391
* ** ** ** ** * * ** * * * * ** * * * * * ***** *
consensus_5901#0 GCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGACCGACCACGCAGCGCAACACTGGCG 476
consensus_5901#1 GGAAAGAGAGATGAAGGTTCAGCATTACTATTCCACCGTCGATCGGGAATGAT-CAGTTG 450
* * * * * ** * * *** **** * * * * * * *
consensus_5901#0 ACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGG 536
consensus_5901#1 ATTGGTTTCGTTTCGATCTGTAACGT-----ACAAGCCAGCAAACGCCAC-CTTCCCTGA 504
* *** ** ** * *** * *** ** * * * * *
consensus_5901#0 GTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGC 596
consensus_5901#1 GTAAC--TGAGTAATGC-----GA--CTAAAATGCTACTAAAGCAGCACAACGCACCACC 555
***** *** * *** ** ** ** ** *** * * * * *
consensus_5901#0 ACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGA 656
consensus_5901#1 GCAGCAGT-TTCGGAGCCGGCCAAGGCAGTTTGTTCGG------TCGGGCCAAGCGTTGT 608
* * * * ** * * ** *** ** * **** * * * **
consensus_5901#0 ACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGA 716
consensus_5901#1 ATGGGCTTCGTGTGTGTGT----GTTTTTTTTATGTAGATCTGTTTTGTATTGCAACTCT 664
* **** * * * * **** ** *** * ***
consensus_5901#0 ATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCG 776
consensus_5901#1 GTTTAATTTCTATTTATTGTA--------------------------------------- 685
*** ** * * ***
consensus_5901#0 CATCCCTTGCACACCGGAACAGAAAACATCAT 808
consensus_5901#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||