cluster # 5902

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Anopheles gambiae
cluster # 5902 cluster # 5902 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5902#0 length = 1213 sequences # 3

consensus_5902#1 length = 519 sequences # 1

consensusID : consensus_5902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1213
fasta sequence

                              [CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAACTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATACTGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAGAAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACATCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGTGTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAGCGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGAACAAACAGAAACACAAAATCAAAACCTTCAAAATGCAAGTTAAAAAAAACAGGCGAAGAAGGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAAAAAAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAAACCAAAACCGAAATCAATCAACTCGGCAATTTAGCGGAATGGTGTAAATCCTGCGTGGCTGTATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTGTGCGTGCATGGGAATGCGTAATGAAGGCAGTAAAAGGATAAACGTCTACGGTATGCGTGCGTGCTCTTACACTAACCTTCTTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTTGCTATCCTTTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGTTTTGGAAAGGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATTGTGAAAAATCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCAAAAAGTATGAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAAGTATCAGAACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAAACCTACTGCCAATAGAACCAA]

[+] EMBL BM631631             [CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAACTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATACTGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAGAAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACATCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGTGTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAGCGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGAACAAACAGAAACACAAAATCAAAACCTTCAAAATGCAAGTTAAAAAAAACAGGCGAAGAAGGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAAAAAAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAAACCAAAACCGAAATCAATCAACTCGGCAATTTAGCGGAATGGTGTAAATCCTGCGTGGCTGTATGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM636697             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgCGGCAATTTAGCGGAACGGTGTAAATCGTGCGTGGCTGTATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTGTGCGTGCATGGGAATGCGTAATGAAGGCAGTAAAAGGATAAACGTCTACGGTATGCGTGCGTGCTCTTACACTAACCTTCTTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTTGCTATCCTTTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGTTTTGGAAAGGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATTGTGAAAAATCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCAAAAAGTATGAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAAGTATCAGAACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAAACCTACTGCCAATAGAACCAA]
[+] EMBL BX625661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCTNCGGTATGCGTGCGTGCTCTTACACTANCCTACCTATCANCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCNTCATCTTGCTATCCTTTANAATTGCGAATGTGATCTAAA                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_5902#0
CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAA
CTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATAC
TGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAG
AAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACA
TCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGT
GTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAG
CGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGA
ACAAACAGAAACACAAAATCAAAACCTTCAAAATGCAAGTTAAAAAAAACAGGCGAAGAA
GGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAAAA
AAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAAAC
CAAAACCGAAATCAATCAACTCGGCAATTTAGCGGAATGGTGTAAATCCTGCGTGGCTGT
ATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTGTGCGTGCATGGGAATGCGTA
ATGAAGGCAGTAAAAGGATAAACGTCTACGGTATGCGTGCGTGCTCTTACACTAACCTTC
TTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTTGCTATCCT
TTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGTTTTGGAAA
GGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATTGTGAAAAA
TCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCAAAAAGTAT
GAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAAGTATCAGA
ACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGTTGCAATGG
AAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAAACCTACTG
CCAATAGAACCAA

consensusID : consensus_5902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGAAAAAAAAAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACGGAAGGATTAAGTGAACTGGAGAACCACACGAAGCAGAAACATAAAACCAATGGACAAAACGAACATAACCGCCTAAATAATAAGTGACGAGAAGCTTTCCCTCTCGTCCAGAATGGGGCAGGCGGGTTCGATCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACGACGCGTTTGGGCAGCAAAAATAGCAAATATTAATGTAGCTTTCCTTTCTGTCCCTAGCGATAATATGCAAAGGCTTCGAGCGAATGCGCCTGATGCACATTGCGTAGTGTAGTTTTGGTAGCCAATTCTGTAACCTTCAAAGTGATCTCTTGTGGAAGCTTTTGGTTTGAACGTGTTTCTCTATACTGAAATGATTGTTTTTCCCTTTTACCCTCCCTTTTTTCTTTTATTT]

[+] EMBL BX620603             [GTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGAAAAAAAAAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACGGAAGGATTAAGTGAACTGGAGAACCACACGAAGCAGAAACATAAAACCAATGGACAAAACGAACATAACCGCCTAAATAATAAGTGACGAGAAGCTTTCCCTCTCGTCCAGAATGGGGCAGGCGGGTTCGATCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACGACGCGTTTGGGCAGCAAAAATAGCAAATATTAATGTAGCTTTCCTTTCTGTCCCTAGCGATAATATGCAAAGGCTTCGAGCGAATGCGCCTGATGCACATTGCGTAGTGTAGTTTTGGTAGCCAATTCTGTAACCTTCAAAGTGATCTCTTGTGGAAGCTTTTGGTTTGAACGTGTTTCTCTATACTGAAATGATTGTTTTTCCCTTTTACCCTCCCTTTTTTCTTTTATTT]




>consensus_5902#1
GTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGAAAAAAA
AAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACGGAAGGATTAAG
TGAACTGGAGAACCACACGAAGCAGAAACATAAAACCAATGGACAAAACGAACATAACCG
CCTAAATAATAAGTGACGAGAAGCTTTCCCTCTCGTCCAGAATGGGGCAGGCGGGTTCGA
TCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACGACGCGTTTGGGCA
GCAAAAATAGCAAATATTAATGTAGCTTTCCTTTCTGTCCCTAGCGATAATATGCAAAGG
CTTCGAGCGAATGCGCCTGATGCACATTGCGTAGTGTAGTTTTGGTAGCCAATTCTGTAA
CCTTCAAAGTGATCTCTTGTGGAAGCTTTTGGTTTGAACGTGTTTCTCTATACTGAAATG
ATTGTTTTTCCCTTTTACCCTCCCTTTTTTCTTTTATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5902#0      CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAA 60
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      CTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATAC 120
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      TGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAG 180
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      AAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACA 240
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      TCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGT 300
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      GTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAG 360
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      CGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGA 420
consensus_5902#1      ---GTACGTAGCAAA--ATG-GCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGA 54
                         *  ***   * *  **  *  *     ** *  **  *           *  * ***

consensus_5902#0      ACAAACAGAAACACAAAATCAAAACCTTCAA--AATGCAAGTTAAAAAAAACAGGCGAAG 478
consensus_5902#1      AAAAAAAAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACG-GAAG 113
                      * *** * * * ******  ******* *    ***  **   * * **** * * ****

consensus_5902#0      AAGGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAA 538
consensus_5902#1      GATTAAGTGAACTGGAGAACCACACGAAGCAGAAACATAAAA-CCAATGGACAAAACGAA 172
                       *   * *    *    * ***  * **    *** * **** * ** * * ** ** **

consensus_5902#0      AAAAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAA 598
consensus_5902#1      CATAACCGCCTAAATAAT--AAGTGACGAGAAGCTTTCCCT---CTCGTCCAGAATGGGG 227
                       * *     * ***  **  **   **  *** *     *    *    * * * **   

consensus_5902#0      ACCAAAACCGAAATCAATCAACTCGGC--AATTTAGCGGAATGGTGTAAATCCTGCGTGG 656
consensus_5902#1      CAGGCGGGTTCGATCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACG 287
                                  ******* *  **     ***       *    *   *** * **  *

consensus_5902#0      CTGTATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTG---TGCGTGCATGGGA 713
consensus_5902#1      ACGCGTTTGGGCAGCAAAAATAGCA-AATATTAATGTAGCTTTCCTTTCTGTCCCTAGCG 346
                        *  *  * *    *    * *   *****   ***   ***    *  ** * * *  

consensus_5902#0      ATGCGTAATGAAGGCAGTAAAAGGATAAACGTC-TACGGTATGCGTGCGTGCTCTTACAC 772
consensus_5902#1      ATAATATGCAAAGGCTTCGAGCGAATGCGCCTGATGCACATTGCGTA-GTGTAGTTTTGG 405
                      **        *****    *  * **   * *  * *    *****  ***   **    

consensus_5902#0      TAACCTTCTTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTT 832
consensus_5902#1      TAGCCAATTCTGTAACCTTCAAAGTGATCTCTTGTG-GAAGCTTTTGGTTTGAACGTGTT 464
                      ** **   *    * *    *** *    * *** * *** ** ***  *  * * * **

consensus_5902#0      GCTATCCTTTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGT 892
consensus_5902#1      TCTCTATACTGAAAT---GATTGTTTTTC----CCTTTTACCCTCCCTTTTTTCTTTTAT 517
                       ** *    * ****   ** ***  *       **** *       *      *  * *

consensus_5902#0      TTTGGAAAGGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATT 952
consensus_5902#1      TT---------------------------------------------------------- 519
                      **                                                          

consensus_5902#0      GTGAAAAATCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCA 1012
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      AAAAGTATGAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAA 1072
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      GTATCAGAACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGT 1132
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      TGCAATGGAAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAA 1192
consensus_5902#1      ------------------------------------------------------------
                                                                                  

consensus_5902#0      ACCTACTGCCAATAGAACCAA 1213
consensus_5902#1      ---------------------