cluster # 5912

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Anopheles gambiae
cluster # 5912 cluster # 5912 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5912#0 length = 720 sequences # 2

consensus_5912#1 length = 139 sequences # 1
consensus_5912#2 length = 87 sequences # 1

consensusID : consensus_5912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence

                              [CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTACGATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGCTGACGGTGCTGAAGGAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAGGTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCGTTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACTCGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCACTCCAGCCTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCTGTGG]

[+] EMBL BM579967             [CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTACGATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGCTGACGGTGCTGAAGGAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAGGTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCGTTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACTCGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCACTCCAGCCTCGAGCTGTTCA                                            ]
[+] EMBL BM576897             [                                ccgCGGCAAACTGCTCTCCGCCCTGTACGATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGTTGACGGTGCTGAAGGAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAGGTCGAGGTGGAAAAACATCGCGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCGTTCGATACTACCGGGCGCTACTTCGGAGAGACGCTTGCACCCGCGCTGACGACACTCGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGTGAAGGCCTGCAGCACTCCAGCTTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCTGTGG]




>consensus_5912#0
CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTAC
GATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGCTGACGGTGCTGAAG
GAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAG
TTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCC
GCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAG
GTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTC
CTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCG
TTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACTCGGC
GCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCC
GTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGG
AAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCACTCC
AGCCTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCTGTGG

consensusID : consensus_5912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [CCGCCCACGCGTCCGCTTATTTACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCC]

[+] EMBL BM610258             [CCGCCCACGCGTCCGCTTATTTACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCC]




>consensus_5912#1
CCGCCCACGCGTCCGCTTATTTACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCC
GCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTC
AGCAAGTACCCGGCCAGCC

consensusID : consensus_5912#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 87
fasta sequence

                              [CCCCGTCCGGCCTAGGGTCCGATCCGCCCGATCGTGCCCTGCCCGTCGCTTCGCTACACCACCTCGTTCCGTGCGGGTCGTGGCTTC]

[+] EMBL CNS09R60             [CCCCGTCCGGCCTAGGGTCCGATCCGCCCGATCGTGCCCTGCCCGTCGCTTCGCTACACCACCTCGTTCCGTGCGGGTCGTGGCTTC]




>consensus_5912#2
CCCCGTCCGGCCTAGGGTCCGATCCGCCCGATCGTGCCCTGCCCGTCGCTTCGCTACACC
ACCTCGTTCCGTGCGGGTCGTGGCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5912#0      CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTAC 60
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      --------------------------------------CCGCCCACGCGTCCGCTTATTT 22
                                                                                  

consensus_5912#0      GATTACCGTCCGGAGC--GGTCCGATTCGCGACAGATCATCGC-CTGGCTGACGGTGCTG 117
consensus_5912#2      ---CCCCGTCCGGCCTAGGGTCCGATCCGC--CCGATCGTGCC-CTGCCCGTCGCTTC-- 52
consensus_5912#1      ACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCCGCCGCTCCGGCCAAGGCTGTT- 81
                              * * *        * **         *  *    * * * *    * *    

consensus_5912#0      AAGGAGGGCCACCT-GTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCC 176
consensus_5912#2      --GCTACACCACCTCGTTCCGTGCGGGTCGTGGCTTC----------------------- 87
consensus_5912#1      AAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCC-- 139
                        *     **     *  **                                        

consensus_5912#0      AAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTC 236
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      GGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGA 296
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      CGAGGTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGA 356
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      CGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCAT 416
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      AGCGTTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACT 476
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      CGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCA 536
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      AGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGA 596
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      CGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCA 656
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      CTCCAGCCTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCT 716
consensus_5912#2      ------------------------------------------------------------
consensus_5912#1      ------------------------------------------------------------
                                                                                  

consensus_5912#0      GTGG 720
consensus_5912#2      ----
consensus_5912#1      ----