cluster # 5916

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Anopheles gambiae
cluster # 5916 cluster # 5916 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5916#0 length = 395 sequences # 3

consensus_5916#1 length = 127 sequences # 1

consensusID : consensus_5916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 395
fasta sequence

                              [CATCACGGAAGCAGGGCGACAAAAGCACGCTCATTTTTCTGTGCCGCTTCTCGAAACGGTCGTATTTACGGATGAAGTCCAGAAAATCACGACGGATGAAAATAGTACGATGCATCTCCATTTTACGCACAAAACCAGTAAGGATACGACCACGGATGGAAATGTGTCCCGTGAATGGGCATTTCTTGTCGATGTAAGTCCCGGTGATGGCCTCTTTCGGAGTTTTGAATCCGAGACCAATGCTATGGTGCATACGCAGCCCCTTCTTCCTGGACACATTCTTGGGGTTTAGGTTGAAACCCAACTGCTTTTGGAACGCGCGGATATTTTGCTGAACAGCCATCTTTACGGTGCGAAAAAAAGCCAGTGGGCCAACAGTCCTCGAGGAATTCCGC]

[+] EMBL CNS08V38             [CATCACGGAAGCAGGGCGACAAAAGCACGCTCATTTTTCTGTGCCGCTTCTCGAAACGGTCGTATTTACGGATGAAGTCCAGAAAATCACGACGGATGACAATAGTACGATGCATCTCCATTTTACGCACAAAACCAGTAAGGATACGACCACGGATGGAAATGTGTCCCGTGAATGGGCATTTCTTGTCGATGTAAGTCCCGGTGATGGCCTCTTTCGGAGTTTTGAATCCGAGACCAATGCTATGGTGCATACGCAGCCCCTTCTTCCTGGACACATTCTTGGGGTTTAGGTTGAAACCCAACTGCTTTTGGAACGCGCGGATATTTTGCTGAACAGCCATCTTTACGGTGCGAAAAAAAGCCAGTGGGCCAACAGTCCTCGAGGAATTCCGC]
[+] EMBL CNS08PG8             [         AGCAGGGCGACAAAGGCACGCTCATTTTTCTGTTCCGCTTCTCGAAACGGTCGTATTTACGGATGAAGTGCAGAAAATCACGACGGATGAAAATAGTACGATGCATCTTCATTTTACGCACAAAACCAGTTAGGATACGACCACGGATGGAAATGTGTCCCGTGAATTGGCATTTCTTGTCGATGTAAGTCCCGGTGATGGCCTCTTTCGGAGTTTTGAATCCGAGAACAATGCTATGGTGCATACGCAGCCCCTTCTTCCTGGACAAATTTTTGCGGTTTAGGTTGAAACCCAACTGCTTTTGGAACGCGCGGATATTTTGCTGATCAGCCATC                                                   ]
[+] EMBL CNS08NT9             [                                                                                        ACGACGGATGAAAATAGTCCGATGCATCTCCATTTTACGCACAAAACCAGTAAGGATACGACCACGGATGGAAATGTGTCCCGTGAATGG                                                                                                                                                                                                                         ]




>consensus_5916#0
CATCACGGAAGCAGGGCGACAAAAGCACGCTCATTTTTCTGTGCCGCTTCTCGAAACGGT
CGTATTTACGGATGAAGTCCAGAAAATCACGACGGATGAAAATAGTACGATGCATCTCCA
TTTTACGCACAAAACCAGTAAGGATACGACCACGGATGGAAATGTGTCCCGTGAATGGGC
ATTTCTTGTCGATGTAAGTCCCGGTGATGGCCTCTTTCGGAGTTTTGAATCCGAGACCAA
TGCTATGGTGCATACGCAGCCCCTTCTTCCTGGACACATTCTTGGGGTTTAGGTTGAAAC
CCAACTGCTTTTGGAACGCGCGGATATTTTGCTGAACAGCCATCTTTACGGTGCGAAAAA
AAGCCAGTGGGCCAACAGTCCTCGAGGAATTCCGC

consensusID : consensus_5916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [AGGCTTGCATTGCTTAAATGAAAAAGAAGAAGCTGAAGAAAATTACATGGAGTGCTGGTGCGGTTGTGGCGAAGAGGATTGAGTTGCAGAATGCTGTATTGAAGCAGTATGGTTATTTTACATGGGA]

[+] EMBL CNS08RED             [AGGCTTGCATTGCTTAAATGAAAAAGAAGAAGCTGAAGAAAATTACATGGAGTGCTGGTGCGGTTGTGGCGAAGAGGATTGAGTTGCAGAATGCTGTATTGAAGCAGTATGGTTATTTTACATGGGA]




>consensus_5916#1
AGGCTTGCATTGCTTAAATGAAAAAGAAGAAGCTGAAGAAAATTACATGGAGTGCTGGTG
CGGTTGTGGCGAAGAGGATTGAGTTGCAGAATGCTGTATTGAAGCAGTATGGTTATTTTA
CATGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5916#0      CATCACGGAAGCAGGGCGACAAAAGCACGCTCATTTTTCTGTGCCGCTTCTCGAAACGGT 60
consensus_5916#1      -------------------------------------------------------AGGCT 5
                                                                             * * *

consensus_5916#0      CGTATTTACGGATGAAGTCCAGAAAATCACGACGGATGAAAATAGTACGATGCATCTCCA 120
consensus_5916#1      TGCATT----GCTTAAATGAAAAAGAAGAAG-CTGAAGAAAATTACATGGAGTGC----- 55
                       * ***    * * ** *  * ** *  * * * ** ******   * *  *        

consensus_5916#0      TTTTACGCACAAAACCAGTAAGGATACGACCACGGATGGAAATGTGTCCCGTGAATGGGC 180
consensus_5916#1      TGGTGCGGTTGTGGCGAA-GAGGATTGAGTTGCAGAATGCTGTATTGAAGCAGTATGGTT 114
                      *  * **       * *   *****       * **  *   * *       * ****  

consensus_5916#0      ATTTCTTGTCGATGTAAGTCCCGGTGATGGCCTCTTTCGGAGTTTTGAATCCGAGACCAA 240
consensus_5916#1      ATTTTACATGGGA----------------------------------------------- 127
                      ****    * *                                                 

consensus_5916#0      TGCTATGGTGCATACGCAGCCCCTTCTTCCTGGACACATTCTTGGGGTTTAGGTTGAAAC 300
consensus_5916#1      ------------------------------------------------------------
                                                                                  

consensus_5916#0      CCAACTGCTTTTGGAACGCGCGGATATTTTGCTGAACAGCCATCTTTACGGTGCGAAAAA 360
consensus_5916#1      ------------------------------------------------------------
                                                                                  

consensus_5916#0      AAGCCAGTGGGCCAACAGTCCTCGAGGAATTCCGC 395
consensus_5916#1      -----------------------------------