cluster # 5917

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Anopheles gambiae
cluster # 5917 cluster # 5917 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5917#0 length = 1535 sequences # 3

consensus_5917#1 length = 630 sequences # 1

consensusID : consensus_5917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1535
fasta sequence

                              [TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAATCCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGAACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACTCGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCGACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGTACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGGACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGGAAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAGAACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGCATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACGCTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATGAACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAGGACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCACTGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAGGCT]

[+] EMBL CNS08H41             [TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAATCCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGAACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACTCGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCGACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGTACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGGACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGGAAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAGAACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGCATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACGCTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATGAACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAGGACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CNS08I50             [                                                                                                                                                                                                                                                                                                                                                                                                TGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGGAAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAGAACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGCATCGATCCGTCCCGCGGTTCGGTCGGTTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACGCTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATGAACCGCCTGTGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAGGACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS09540             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                aagccgTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGACCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCACTGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAGGCT]




>consensus_5917#0
TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAAT
CCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGA
ACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACT
CGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCG
ACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGT
ACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGG
ACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGG
AAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAG
AACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGC
ATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACG
CTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATG
AACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAG
GACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCC
GCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTA
TCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTA
CGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCG
ATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGA
TCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCC
GCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGT
AAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACC
AAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCA
GCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCA
AAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAG
AGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCAC
TGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCACG
AAGCCGTACCAGATCATCCAGGACATCCGCAGGCT

consensusID : consensus_5917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CCGCCCACGCGTCCGCGCCCGTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAAGCAAGGCATGGCACGCGGGCGGTATGA]

[+] EMBL BM621405             [CCGCCCACGCGTCCGCGCCCGTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAAGCAAGGCATGGCACGCGGGCGGTATGA]




>consensus_5917#1
CCGCCCACGCGTCCGCGCCCGTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCG
CATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTAT
CTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTAC
GCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGA
TCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGAT
CTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCG
CAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTA
AACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCA
AGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAG
CAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAA
AAAGCAAGGCATGGCACGCGGGCGGTATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5917#0      TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAAT 60
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      CCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGA 120
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACT 180
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      CGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCG 240
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGT 300
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGG 360
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGG 420
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      AAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAG 480
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      AACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGC 540
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACG 600
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      CTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATG 660
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      AACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAG 720
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      GACGATGACA-ACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCC 779
consensus_5917#1      -CCGCCCACGCGTCCGCGCCCGT-CGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCC 58
                        **   **      **** *** ************************************

consensus_5917#0      CGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGT 839
consensus_5917#1      CGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGT 118
                      ************************************************************

consensus_5917#0      ATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGT 899
consensus_5917#1      ATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGT 178
                      ************************************************************

consensus_5917#0      ACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCC 959
consensus_5917#1      ACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCC 238
                      ************************************************************

consensus_5917#0      GATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAG 1019
consensus_5917#1      GATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAG 298
                      ************************************************************

consensus_5917#0      ATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATC 1079
consensus_5917#1      ATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATC 358
                      ************************************************************

consensus_5917#0      CGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTG 1139
consensus_5917#1      CGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTG 418
                      ************************************************************

consensus_5917#0      TAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTAC 1199
consensus_5917#1      TAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTAC 478
                      ************************************************************

consensus_5917#0      CAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGC 1259
consensus_5917#1      CAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGC 538
                      ************************************************************

consensus_5917#0      AGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTC 1319
consensus_5917#1      AGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTC 598
                      ************************************************************

consensus_5917#0      AAAA-GCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGA 1378
consensus_5917#1      AAAAAGCAAGGCATGGCACGCGGGCGGTATGA---------------------------- 630
                      **** ***************************                            

consensus_5917#0      AGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGC 1438
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ACTGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCA 1498
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      CGAAGCCGTACCAGATCATCCAGGACATCCGCAGGCT 1535
consensus_5917#1      -------------------------------------