cluster # 5918

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Anopheles gambiae
cluster # 5918 cluster # 5918 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5918#0 length = 662 sequences # 1

consensus_5918#1 length = 506 sequences # 1
consensus_5918#2 length = 435 sequences # 2

consensusID : consensus_5918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGTACTCGGTCTGGATCGGTGGCTCCATCCTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCTGGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTGGGATAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGCGCTACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGCATCGTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGCCATCTTCCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGATATGTATTTCGTTGCCAAAATTCGATTCCATCCGAAGGAACACACCAAGTTGCTAGAAAAGGAAGGTACTGACGTATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCTTTTAACCGTGAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTCGACTTATCAAACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACTCTTATTTTAAT]

[+] EMBL BM611457             [CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGTACTCGGTCTGGATCGGTGGCTCCATCCTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCTGGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTGGGATAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGCGCTACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGCATCGTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGCCATCTTCCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGATATGTATTTCGTTGCCAAAATTCGATTCCATCCGAAGGAACACACCAAGTTGCTAGAAAAGGAAGGTACTGACGTATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCTTTTAACCGTGAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTCGACTTATCAAACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACTCTTATTTTAAT]




>consensus_5918#0
CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGTACTCGGTCTGGATCGGTGGCTCCATC
CTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCT
GGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTGGGA
TAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGCGCT
ACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGCATC
GTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGCCATCTT
CCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGATATGTA
TTTCGTTGCCAAAATTCGATTCCATCCGAAGGAACACACCAAGTTGCTAGAAAAGGAAGG
TACTGACGTATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCTTTTAACCGT
GAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTCGACTTATCA
AACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACTCTTATTTTA
AT

consensusID : consensus_5918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CCGCCCACGCGTCCGGAAGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCGACCACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTGCCGTGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTGCGCGTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTCTGTGTGCTTAGGGTTTGTGTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGTGTGTGTGCTTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGTGTGCGGGTCTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCAGAGTCGTCTCCCTCCTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTGCGGAAAAGTCTTTCAGCCGAAGTATCCAATAGTCAAG]

[+] EMBL BM602815             [CCGCCCACGCGTCCGGAAGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCGACCACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTGCCGTGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTGCGCGTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTCTGTGTGCTTAGGGTTTGTGTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGTGTGTGTGCTTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGTGTGCGGGTCTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCAGAGTCGTCTCCCTCCTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTGCGGAAAAGTCTTTCAGCCGAAGTATCCAATAGTCAAG]




>consensus_5918#1
CCGCCCACGCGTCCGGAAGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCGACC
ACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTGCCG
TGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTGCGC
GTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTCTGTGTGCTT
AGGGTTTGTGTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGTGTGTGTGC
TTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGTGTGCGGGT
CTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCAGAGTCGTCTCCCTC
CTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTGCGGAAAAGTCT
TTCAGCCGAAGTATCCAATAGTCAAG

consensusID : consensus_5918#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 435
fasta sequence

                              [CCGCCCACGCGTCCG---GAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGAGTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATCCGATGATACCTGCCTATCCACGGGATGCCTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTCGTTTTCCCCCTGTTCCCCCCCCTTTCGCGGGTTGAGCGGTACCCGGGGTTGAAGCAGGGACTGCGCCCCGACACCCCCCCCCCCCCCCCGAGGACTGGCCAGCTCCATGGCTCGCATAAACGAACGCAGGCTAAA]

[+] EMBL BM602426             [CCGCCCACGCGTCCG   GAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGAGTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATCCGATGATACCTGCCTATCCACGGGATGCCTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTCGTTTTCCCCCTGTTCCCCCCCCTTTCGCGGGTTGAGCGGTACCCGGGGTTGAAGCAGGGACTGCGCCCCGACACCCCCCCCCCCCCCCCGAGGACTGGCCAGCTCCATGGCTCGCATAAACGAACGCAGGCTAAA]
[+] EMBL BM576565             [CCGCCCACGCGTCCGGAAGAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGAGTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATCCGATGATACCTGC                                                                                                                                                                                      ]




>consensus_5918#2
CCGCCCACGCGTCCGGAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGC
TGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCT
CCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGA
GTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATC
CGATGATACCTGCCTATCCACGGGATGCCTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTC
GTTTTCCCCCTGTTCCCCCCCCTTTCGCGGGTTGAGCGGTACCCGGGGTTGAAGCAGGGA
CTGCGCCCCGACACCCCCCCCCCCCCCCCGAGGACTGGCCAGCTCCATGGCTCGCATAAA
CGAACGCAGGCTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5918#1      CCGCCCACGCGTCCGGA---AGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCG 57
consensus_5918#2      CCGCCCACGCGTCCGGA---A----ACCGC-----AAATGGC-TCCACCGAC--GATCGG 45
consensus_5918#0      CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGT-ACTCGGTCTGGATCGGT--GGCTCC 57
                      ****************    *      ***     *   **  *    **    *     

consensus_5918#1      ACCACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTG 117
consensus_5918#2      --CAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGC-CAGACAGTA-GTG 101
consensus_5918#0      ATCCTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAG 117
                        *    *                **  *         *    ***      *    * *

consensus_5918#1      CCGTGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTG 177
consensus_5918#2      CAGCG-CCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACG-GCCACG----TGATGCC 155
consensus_5918#0      TCTGGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTG 177
                          * **         **   *        * *         *   *         *  

consensus_5918#1      CGCGTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTC--TGTG 235
consensus_5918#2      TGCGAAGCCTGGGACTGCTG-CGCGAGTTCTACCGTCGTCGATGGCTGCCCATC--TTGC 212
consensus_5918#0      GGATAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGC 237
                       *        * *    ***    **       * *        *               

consensus_5918#1      TGCTTAGGGTTTGT---GTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGT 292
consensus_5918#2      GATGTCCGACCTAC---G-GCGAATTCCGATCCGATGATACCTGCCTATCCACGGGATGC 268
consensus_5918#0      GCTACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGC 297
                                 *        *        *  *   *  *              *   * 

consensus_5918#1      GTGTGTGCTTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGT 352
consensus_5918#2      CTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTCGTTTTCCCCCTGTTCCCCCCCCTTTCGC 328
consensus_5918#0      ATC-GTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGC-C 355
                       *  *** *                      **       *         *    * *  

consensus_5918#1      GTGCGGGTCTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCA---GAG 409
consensus_5918#2      GGGTTGAGCGGTACCCGGG-GTTGAAGCAGGGACTGCGCCCCGACACC------------ 375
consensus_5918#0      ATCTTCCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGAT 415
                                 *   *  *  *    *         * * *   ** *            

consensus_5918#1      TCGTCTCCCTCCTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTG 469
consensus_5918#2      -CCCCCCCCCCCCCCGAGGACTG-GCCAGCTCC---ATGGCTCGCAT-AAACGAACGCAG 429
consensus_5918#0      ATGTATTTCGTTGCCAAAATTCGATTCCATCCG---AAGGAACACACCAAGTTGCTAGAA 472
                              *     * *     *             * *     **  **          

consensus_5918#1      CGGAAAAGTCTTTCAGCCGAAGTATCCAATAGTCAAG----------------------- 506
consensus_5918#2      GCTAAA------------------------------------------------------ 435
consensus_5918#0      AAGGAAGGTACTGACGT-ATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCT 531
                          **                                                      

consensus_5918#1      ------------------------------------------------------------
consensus_5918#2      ------------------------------------------------------------
consensus_5918#0      TTTAACCGTGAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTC 591
                                                                                  

consensus_5918#1      ------------------------------------------------------------
consensus_5918#2      ------------------------------------------------------------
consensus_5918#0      GACTTATCAAACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACT 651
                                                                                  

consensus_5918#1      -----------
consensus_5918#2      -----------
consensus_5918#0      CTTATTTTAAT 662