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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1114 fasta sequence
[GCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGCTACTCAATCTTCTTCACACTTTTTCAGTACACACCAGACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGAAAGGAAACCAAAAATCCAATTCACTAGAACGTTCGATTGGTTCGATTAGAAGAAGGCAATTCGGCGATCGTTTGACAGTAAGTATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGCAGACGGAAGGAAGTGTTTAACACACACCGTTATGCGTAATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCTTTTTGCTAGACGTCGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGCGTATGTAAGTGGGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTTAAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGACATATCATTTAAAACGTTAAAACGAAAGCTCGAAACAAGCAAAGGATAAAATCGTCACCGTACGAAATGTATGAGCGTAGCAAGAGCGAAAAGAAGGAACAATGAAATATGTAAGAGG]
[+] EMBL BX625987 [GCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGCTACTCAATCTTCTTCACACTTTTTCAGTACACACCAGACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGAAAGGAAACCAAAAATCCAATTCACTAGAACGTTCGATTGGTTCGATTAGAAGAAGGCAATTCGGCGATCGTTTGACAGTAAGTATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGCAGACGGAAGGAAGTGTTTAACACACACCGTTATGCGTAATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCTTTTTGCTAGACGTCGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGGTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACNAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAA ]
[+] EMBL BM638094 [ ccgGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCTTTTTGCTAGACGTCGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGCGTATGTAAGTGGGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTTAAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGACAT ]
[+] EMBL BM579019 [ ccgATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGCGTATGTAAGT GGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTTAAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGACATATCATTTAAAACGTTAAAACGAAAGCTCGAAACAAGCAAAGGATAAAATCGTCACCGTACGAAATGTATGAGCGTAGCAAGAGCGAAAAGAAGGAACAATGAAATATGTAAGAGG]
consensusID : consensus_5934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[AGTAAATAATGGAATATTAATACGAAGAAGAAGATAAGAAACAGATGCAATAAGCAAAAGATGTCCCTTGAAATGACAGTATTTATTGTAGAATAGAAATAACTAAATGCAAAGCAGCTAGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGAT]
[+] EMBL BX612359 [AGTAAATAATGGAATATTAATACGAAGAAGAAGATAAGAAACAGATGCAATAAGCAAAAGATGTCCCTTGAAATGACAGTATTTATTGTAGAATAGAAATAACTAAATGCAAAGCAGCTAGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGAT]
consensusID : consensus_5934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CGACCCACGCGTCCGGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAGGCATACTAGCAAACAAACTAT]
[+] EMBL BM639454 [CGACCCACGCGTCCGGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAGGCATACTAGCAAACAAACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5934#1 AGTAAATAATGGAATATTAATACGAAGAAGAAGATAAGAAACAGATGCAATAAGCAAAAG 60
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 ------------------------------------------------------------
consensus_5934#1 ATGTCCCTTGAAATGACAGTATTTATTGTAGAATAGAAATAACTAAATGCAAAGCAGCTA 120
consensus_5934#2 ---------------------------------------------CGACCCACGCGTCCG 15
consensus_5934#0 ------------------------------------------------------------
consensus_5934#1 GTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTT 180
consensus_5934#2 GTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTT 75
consensus_5934#0 ---------GCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGCT 51
************************************************* *
consensus_5934#1 ACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTT 240
consensus_5934#2 ACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTT 135
consensus_5934#0 ACTCAATCTTCTTCACACTTTTTCAGTACACACCAGACATTGGCATGTTCTTAAACAGTT 111
*********************************** ************************
consensus_5934#1 GTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTA 300
consensus_5934#2 GTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTA 195
consensus_5934#0 GTATCTAGATATAGATAGTTGCTAGCATGGGAGAAAGGAAACCAAAAATCCAATTCACTA 171
********************************** *************************
consensus_5934#1 GAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAG 360
consensus_5934#2 GAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAG 255
consensus_5934#0 GAACGTTCGATTGGTTCGATTAGAAGAAGGCAATTCGGCGATCGTTTGACAGTAAG---- 227
******* *************************** *********** *******
consensus_5934#1 GCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAA 420
consensus_5934#2 GCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAA 315
consensus_5934#0 ----------TATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGCAG 277
*********************************************** *
consensus_5934#1 ACGGAAGGAAGTGTTTAACACACACCGTTAT-------TGTGCTGGTTGGAAAGCCATTA 473
consensus_5934#2 ACGGAAGGAAGTGTTTAACACACACCGTTAT-------TGTGCTGGTTGGAAAGCCATTA 368
consensus_5934#0 ACGGAAGGAAGTGTTTAACACACACCGTTATGCGTAATTGTGCTGGTTGGAAAGCCATTA 337
******************************* **********************
consensus_5934#1 ACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGT 533
consensus_5934#2 ACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGT 428
consensus_5934#0 ACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCC-TTTTTGCTAGACGT 396
********************************************* **************
consensus_5934#1 CGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTA 593
consensus_5934#2 CGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTA 488
consensus_5934#0 CGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTA 456
************ ***********************************************
consensus_5934#1 CTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGT 653
consensus_5934#2 CTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGT 548
consensus_5934#0 CTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGT 516
************************************************************
consensus_5934#1 ATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGAT--------- 704
consensus_5934#2 ATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAG 608
consensus_5934#0 ATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAG 576
***************************************************
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 AAAGGCATACTAGCAAACAAACTAT----------------------------------- 633
consensus_5934#0 AAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATA 636
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 AATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACA 696
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 TATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAA 756
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 ACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCA 816
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 GTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGC 876
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 GTATGTAAGTGGGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTT 936
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 AAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGA 996
consensus_5934#1 ------------------------------------------------------------
consensus_5934#2 ------------------------------------------------------------
consensus_5934#0 CATATCATTTAAAACGTTAAAACGAAAGCTCGAAACAAGCAAAGGATAAAATCGTCACCG 1056
consensus_5934#1 ----------------------------------------------------------
consensus_5934#2 ----------------------------------------------------------
consensus_5934#0 TACGAAATGTATGAGCGTAGCAAGAGCGAAAAGAAGGAACAATGAAATATGTAAGAGG 1114
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||