These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1301 fasta sequence [CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACTTATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACTCTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCTATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACATTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTTAGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCACGTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCGTATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTTTCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGATGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA] [+] EMBL BM583431 [CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACTTATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACTCTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCTATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACATTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTTAGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCACGTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCGTATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTTTCCAA ] [+] EMBL BM655107 [ ccGCACGCACCCACTGGTTTGAACCACGTCCCCAACCAC GGGGGATCGAGAAATGC TTCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGATGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGC ] [+] EMBL BM576525 [ ccGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA] consensusID : consensus_5941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACATAACGCTGCGTTGCACCCTTTTCAC] [+] EMBL BX611127 [GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGTGTG ] [+] EMBL BX608087 [ ACTGGTTCGAACCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAGGTGTGCGTGTGCGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACATAACGCTGCGTTGCACCCTTTTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5941#0 CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACT 60 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 TATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACT 120 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 CTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCT 180 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 ATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACA 240 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 TTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTT 300 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 AGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCAC 360 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 GTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCG 420 consensus_5941#1 ---------------------------------------------GCCGAATTAATTAAG 15 * ******** * consensus_5941#0 TATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC 480 consensus_5941#1 AATTAGTCGTGTCCCT----GTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC 71 **** ******* * **************************************** consensus_5941#0 ACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTT 540 consensus_5941#1 ACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGG-ATCGAGAAATGCTT 130 ******************** ** ********************* ************** consensus_5941#0 TCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGA 600 consensus_5941#1 -CCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAA-CCAA 188 **************** ****** * *** ************** ******** ** * consensus_5941#0 TGCACTATC--CCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCC 658 consensus_5941#1 TGCACCATCTCCCATCCCGATTTTGCCAAAATCA-TCCACTCACCAACCGAAGCGAGGCC 247 ***** *** ******************** ** ************** *** ***** consensus_5941#0 AGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGA 718 consensus_5941#1 AGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTT---GTTTTCGGTATCAGA 304 ******************************* ********** ****** *** **** consensus_5941#0 AGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCG 778 consensus_5941#1 AGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCG 364 ** ************ ***** ********************************* *** consensus_5941#0 AAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAAT 838 consensus_5941#1 AATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCA-T 423 ** ************************** ******** ********* ********* * consensus_5941#0 GTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTG--TGT 896 consensus_5941#1 GTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGT 483 ****************** ***** ****************** *********** *** consensus_5941#0 GTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACT 956 consensus_5941#1 GTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACT 543 ****************************** ***** *********************** consensus_5941#0 AAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATA 1016 consensus_5941#1 AAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAA--AAAACGATTCACCACCACATA 601 ************************************* *** ***************** consensus_5941#0 AAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACA 1076 consensus_5941#1 ACGCTGCGTTGCACCCTTTTCAC------------------------------------- 624 * **************** **** consensus_5941#0 TAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAA 1136 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 AAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAG 1196 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 TTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACA 1256 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 AACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA 1301 consensus_5941#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||