cluster # 5942

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Anopheles gambiae
cluster # 5942 cluster # 5942 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5942#0 length = 902 sequences # 3

consensus_5942#1 length = 273 sequences # 1
consensus_5942#2 length = 268 sequences # 1

consensusID : consensus_5942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 902
fasta sequence

                              [CTCTCAAGAGAATGATTACGCAACTATGTTCGCGCGGCGCCTCCACCGGGGATGAACGGTGGTGTGTGTGTGTTTGTGTGTGTGAGTGTATGATGAGGGTTGTCTTGCAAGACGAGAACATTCCGGTCCCAGCACCGCAGACACACTTCACACACAAACACATAAAGATGGTAAAAAAGGGAGCATATATATTAGTAAAGTCCGATATCAAATTTTGTCTTCCGCGTATGATACGCACACACACACACACAGAGATTGTACACCGCGTGGGTTTGTGTGTGTGTGCGCACAAAGATAATGCGCATAATCTAGCATAGAAAACAACACCCTGCTTGCTACTATTATCTGCACAAGGGCGTAAGGCATTATGTGGCCATAGCGAACTACGGAAGTTTGTGAAAAATTGTGAGAAAAAATGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGAATGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAGACACAACGAAACGAAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTTAAATACAGCATTACAAACAAAACAAAACAAAACAAAAACGGAGAAATGAAGTTGCTAACAGAGGTTTGTAGCTTATGTATGGGGAAGAACCCGCTGCGCTTTAGTGGCGGCATAATAGTATACAGGCTGTTCCATTCCGGCATTACTTTCGATTGCGAAGTAAATAAAGTTGTCTGTCGAGATATATAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGCCACATGTG]

[+] EMBL BX626210             [CTCTCAAGAGAATGATTACGCAACTATGTTCGCGCGGCGCCTCCACCGGGGATGAACGGTGGTGTGTGTGTGTTTGTGTGTGTGAGTGTATGATGAGGGTTGTCTTGCAAGACGAGAACATTCCGGTCCCAGCACCGCAGACACACTTCACACACAAACACATAAAGATGGTAAAAAAGGGAGCATATATATTAGTAAAGTCCGATATCAAATTTTGTCTTCCGCGTATGATACGCACACACACACACACAGAGATTGTACACCGCGTGGGTTTGTGTGTGTGTGCGCACAAAGATAATGCGCATAATCTAGCATAGAAAACAACACCCTGCTTGCTACTATTATCTGCACAAGGGCGTAAGGCATTATGTGGCCATAGCGAACTACGGAAGTTTGTGAAAAATTGTGAGAAAAAATGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTT GTGGGACGAATGGACGAATGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAGGCAC     AACGAAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCT                                                                                                                                                                                                                                             ]
[+] EMBL CNS08GPT             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   tggAAAACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGAATGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAG AATATTTAGACACAACGAAACGAAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTTAAATACAGCATTACAAACAAAACAAAACAAAACAAAAACGGAGAAATGAAGTTGCTAACAGAGGTTTGTAGCTTATGTATGGGGAAGAACCCGCTGCGCTTTAGTGGCGGCATAATAGTATACAGGCTGTTCCATTCCGGCATTACTTTCGATTGCGAAGTAAATAAAGTTGTCTGTCGAGATATATAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGCCAC     ]
[+] EMBL CNS08GLN             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGAATGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGA  CAATATTTAGACACAACGAAACGAAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTTAAATACAGCATTACAAACAAAACAAAACAAAACAAAAACGGAGAAATGAAGTTGCTAACAGAGGTTTGTAGCTTATGTATGGGGAAGAACCCGCTGCGCTTTAGTGGCGGCATAATAGTATACAGGCTGTTCCATTCCGGCATTACTTTCGATTGCGAAGTAAATAAAGTTGTCTGTCGAGATATATAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGCCACATGTG]




>consensus_5942#0
CTCTCAAGAGAATGATTACGCAACTATGTTCGCGCGGCGCCTCCACCGGGGATGAACGGT
GGTGTGTGTGTGTTTGTGTGTGTGAGTGTATGATGAGGGTTGTCTTGCAAGACGAGAACA
TTCCGGTCCCAGCACCGCAGACACACTTCACACACAAACACATAAAGATGGTAAAAAAGG
GAGCATATATATTAGTAAAGTCCGATATCAAATTTTGTCTTCCGCGTATGATACGCACAC
ACACACACACAGAGATTGTACACCGCGTGGGTTTGTGTGTGTGTGCGCACAAAGATAATG
CGCATAATCTAGCATAGAAAACAACACCCTGCTTGCTACTATTATCTGCACAAGGGCGTA
AGGCATTATGTGGCCATAGCGAACTACGGAAGTTTGTGAAAAATTGTGAGAAAAAATGCA
TTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAA
AGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGAATGGACGGACACGG
ACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAG
ACACAACGAAACGAAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCA
ACTCTTTAAATACAGCATTACAAACAAAACAAAACAAAACAAAAACGGAGAAATGAAGTT
GCTAACAGAGGTTTGTAGCTTATGTATGGGGAAGAACCCGCTGCGCTTTAGTGGCGGCAT
AATAGTATACAGGCTGTTCCATTCCGGCATTACTTTCGATTGCGAAGTAAATAAAGTTGT
CTGTCGAGATATATAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGCCACATG
TG

consensusID : consensus_5942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CCGCGGACGCGTGGGGAAAAAATGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGGAAGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAGGCACAACGAAACGAAATGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTT]

[+] EMBL BM597599             [CCGCGGACGCGTGGGGAAAAAATGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGGAAGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAGGCACAACGAAACGAAATGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTT]




>consensus_5942#1
CCGCGGACGCGTGGGGAAAAAATGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCA
CAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGG
ACGAATGGACGGAAGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGG
CAGTATGTGAGCGAAGCAATATTTAGGCACAACGAAACGAAATGAAATCCTGTAAAACAT
TCCAAGAGTGTTACGATTGAGCAGCAACTCTTT

consensusID : consensus_5942#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence

                              [CCGCCCACGCGTCCGTGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAGGCACACCAACAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTTAAATACAGCATTAC]

[+] EMBL BM607885             [CCGCCCACGCGTCCGTGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAATATTTAGGCACACCAACAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTGAGCAGCAACTCTTTAAATACAGCATTAC]




>consensus_5942#2
CCGCCCACGCGTCCGTGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACT
ATTACGACTATACGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATG
GACGGACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAA
GCAATATTTAGGCACACCAACAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTG
AGCAGCAACTCTTTAAATACAGCATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5942#0      CTCTCAAGAGAATGATTACGCAACTATGTTCGCGCGGCGCCTCCACCGGGGATGAACGGT 60
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      GGTGTGTGTGTGTTTGTGTGTGTGAGTGTATGATGAGGGTTGTCTTGCAAGACGAGAACA 120
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      TTCCGGTCCCAGCACCGCAGACACACTTCACACACAAACACATAAAGATGGTAAAAAAGG 180
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      GAGCATATATATTAGTAAAGTCCGATATCAAATTTTGTCTTCCGCGTATGATACGCACAC 240
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      ACACACACACAGAGATTGTACACCGCGTGGGTTTGTGTGTGTGTGCGCACAAAGATAATG 300
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      CGCATAATCTAGCATAGAAAACAACACCCTGCTTGCTACTATTATCTGCACAAGGGCGTA 360
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      AGGCATTATGTGGCCATAGCGAACTACGGAAGTTTGTGAAAAATTGTGAGAAAAAA---- 416
consensus_5942#2      -----------------------------------------CCGCCCACGCGTCCG---- 15
consensus_5942#1      -----------------------------------------CCGCGGACGCGTGGGGAAA 19
                                                                       *          

consensus_5942#0      ---TGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATA 473
consensus_5942#2      ---TGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATA 72
consensus_5942#1      AAATGCATTTATTATGTTAAGAGCAAAGACAAACAACAGCACAGTACTATTACGACTATA 79
                         *********************************************************

consensus_5942#0      CGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGAATGGACG 533
consensus_5942#2      CGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACG-------- 124
consensus_5942#1      CGCAGAAAGAGAAAAGGTACACGTGGCGACTTTTTCGTGGGACGAATGGACGGAAGGACG 139
                      ****************************************************        

consensus_5942#0      GACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAA 593
consensus_5942#2      GACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAA 184
consensus_5942#1      GACACGGACACGACTGGGACTTGTAGGGCTAGGCATTAAGGCAGTATGTGAGCGAAGCAA 199
                      ************************************************************

consensus_5942#0      TATTTAGACACAACGAAACGAAACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTG 653
consensus_5942#2      TATTTAGGCACACCAACA----ACGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTG 240
consensus_5942#1      TATTTAGGCACAACGAAACGAAATGAAATCCTGTAAAACATTCCAAGAGTGTTACGATTG 259
                      ******* **** * * *    * ************************************

consensus_5942#0      AGCAGCAACTCTTTAAATACAGCATTACAAACAAAACAAAACAAAACAAAAACGGAGAAA 713
consensus_5942#2      AGCAGCAACTCTTTAAATACAGCATTAC-------------------------------- 268
consensus_5942#1      AGCAGCAACTCTTT---------------------------------------------- 273
                      **************                                              

consensus_5942#0      TGAAGTTGCTAACAGAGGTTTGTAGCTTATGTATGGGGAAGAACCCGCTGCGCTTTAGTG 773
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      GCGGCATAATAGTATACAGGCTGTTCCATTCCGGCATTACTTTCGATTGCGAAGTAAATA 833
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      AAGTTGTCTGTCGAGATATATAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAGAAAAAGG 893
consensus_5942#2      ------------------------------------------------------------
consensus_5942#1      ------------------------------------------------------------
                                                                                  

consensus_5942#0      CCACATGTG 902
consensus_5942#2      ---------
consensus_5942#1      ---------