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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 817 fasta sequence
[CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTAGAGAAAAACAAAAGGTAAACAAACACAT-CATAT-C-GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC-TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAG-TGCTGCTGGCCTACAGTGTACT-ATGCGTCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA]
[+] EMBL BM595180 [CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAATTGGTAGAGAAAAACAAAAGGTAAACAAACACAT CATAT C GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTG ]
[+] EMBL BM606707 [ CCGGTAGAGAAAAACAAAAGGTAAACAAACACAT CATAT C GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAG TGCTGCTGGCCTACAGTGTACT ATGCGT ]
[+] EMBL BX466309 [ gatcggccgAGGGATTAACAAAAGGT AACAAACACATCCATATNCGGGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGATGCTGCTGGCCTACAGTGTACTCATGCGTCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA]
consensusID : consensus_5955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence
[CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATCTGCCACCGTGCAGCCGGGCC]
[+] EMBL BM608673 [CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATCTGCC ]
[+] EMBL BM576449 [ ccgCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAGGTCGATGGTTGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5955#0 CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTA 60
consensus_5955#1 ------------------------------------------------------------
consensus_5955#0 GAGAAAAACAAAAGGTAAACAAACACATCATATCGGCGAAAAATTTTGCACGCAGAAACC 120
consensus_5955#1 ------------------CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACC 42
* *** ***************************
consensus_5955#0 CACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGT 180
consensus_5955#1 TACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGT 102
*** *********************************************** *******
consensus_5955#0 ATGATATTCCCACGGAAGTCACACACCGTCAGAGAG----TGCACTACCCGGGCCCTGCA 236
consensus_5955#1 ATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCA 162
********** ************************* ********************
consensus_5955#0 TTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCC 296
consensus_5955#1 TTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCC 222
************************************************************
consensus_5955#0 TTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCC 356
consensus_5955#1 TTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCC 282
************************************************************
consensus_5955#0 CCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGA 416
consensus_5955#1 CCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGA 342
************************************************************
consensus_5955#0 ACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCAT 476
consensus_5955#1 ACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCAT 402
************************************************************
consensus_5955#0 CACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGC 536
consensus_5955#1 CACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGC 462
************************************************************
consensus_5955#0 AGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACT 596
consensus_5955#1 AGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACT 522
************************************************************
consensus_5955#0 ACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCG 656
consensus_5955#1 ACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCG 582
************************************************************
consensus_5955#0 TCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTG 716
consensus_5955#1 TCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGG-TGGCTCGCGCTT-AAGTCGATG 640
********************** ************** ************ **** **
consensus_5955#0 GTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAA 776
consensus_5955#1 GTTGG-TGCGCCGAAACCATCTGCCACCGTGCAGCCGGGCC------------------- 680
***** ********* *********************** *
consensus_5955#0 TCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA 817
consensus_5955#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||