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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence
[CCGCGGACGCGTGGGCGCTGCGAAGCGAATTCAGTGTTCAGTTAGAAAAGAAGAAAAAAAAAAAAAACAAAAAAACGCTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAAAAGAGTAAATAAAACAGAAGTAAAGAAGAAATCGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAGGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTCTCTATGGTTGGCTTCGTGCTTGAACGCTTTAAAGCCTTGTATTGGCGAAGCAAAAACAGAAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATAT--------ACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGGC--TCCGTATTATTACAATCAATTATGCATTAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGGTGATGCATTATCGATCAAATAATAAAACGTACTGTA]
[+] EMBL BM642639 [CCGCGGACGCGTGGGCGCTGCGAAGCGAATTCAGTGTTCAGTTAGAAAAGAAGAAAAAAAAAAAAAACAAAAAAACGCTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAAAAGAGTAAATAAAACAGAAGTAAAGAAGAAATCGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAGGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTCTCTATGGTTGGCTTCGTGCTTGAACGCTTTAAAGCCTTGTATTGGCGAAGCAAAAACAGAAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATAT ACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGGC TCCGTATTATTACAATCAATTATGCATTAATAATTAAACGCGCAGCATTACTAATTGAATTTAA ]
[+] EMBL BM576309 [ ccgAAAGTAAGTGTGATTGAGGAAAAAGAGTACATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTCTCTATGGTTGGCTTCGTGCTTGAATGCTTTAAAGCCTTGTATTCGCGAAGCAAAA AAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATATACACACACACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGTCTATCCGTATTATTACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGGTGATGCATTATCGATCAAATAATAAAACGTACTGTA]
consensusID : consensus_5964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence
[AGGTATTGTCTCTTCATAGCTTACAAGTTATGATGTAATTGGATCTTTTTATGGTAGTCTTATCGGATAACAAAATCTTATCGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGTTTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTTTATTTCACCTCTATGGTCGTCCTTCTCTATCCCGTTCTCTGCATAAGTGCCCTCCCGCTGCGAAGCGAATTCAGTGAAGGAGTTAGAAAAGAAG--AAAAAAAC-AAAAAAAACGCTTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATNGAGGNAAAAGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGNAAGAAGACNAAACTAACAACNAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGGCGGTAACAATTANGCAGTNAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTC]
[+] EMBL BX624329 [AGGTATTGTCTCTTCATAGCTTACAAGTTATGATGTAATTGGATCTTTTTATGGTAGTCTTATCGGATAACAAAATCTTATCGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGTTTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTTTATTTCACCTCTATGGTCGTCCTTCTCTATCCCGTTCTCTGCATAAGTGCCCTCCCGCTGCGAAGCGAATTCAGTGAAGGAGTTAGAAAAGAAG AAAAAAAC AAAAAAAACGCTTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATNGAGGNAAAAGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGNAAGAAGACNAAACTAACAACNAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGGCGGTAACAATTANGCAGTNAAATGTCACTATATATGCTTTGTT ]
[+] EMBL BX604634 [ CGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGTTTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTATATTTCACCTCTATAGTCGTCCTTCTCTATCCCGTTCTCTGCATAAGTGCCCTCCCGCTGCGAAGCGAATTCAGTGAAGGAGTTAGAAAAGAAGAAAAAAAAACAAAAAAAAACGCTTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAAAAGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTC]
consensusID : consensus_5964#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CCGCGGACGCGTGGGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATATACACACACACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGTCTATCCGTATTATTACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGTTGATGCATTATCGATCAAATAATAAAACGTACTGTAGTCGATACACGTAGGAAAGGATAAAACAATGGGGCGCCTCTTTCCGCATGCCGCCGAGAGGTGTGGCGGTGGGATCGTCCCCGGATGTCGCGTTAATGGGCAACATTAACAAAACATTACGATCAATCGAACGGGCAAATTAAAACACCAACTCTCACACATCCACAAACACACACACACAAACGGGCCCGGGGACAGTCACCAGGTGTGCGCTGTGTGTAGACAGCATGCACAGATGTAACTAATTATTAATTAT]
[+] EMBL BM614389 [CCGCGGACGCGTGGGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATATACACACACACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGTCTATCCGTATTATTACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGTTGATGCATTATCGATCAAATAATAAAACGTACTGTAGTCGATACACGTAGGAAAGGATAAAACAATGGGGCGCCTCTTTCCGCATGCCGCCGAGAGGTGTGGCGGTGGGATCGTCCCCGGATGTCGCGTTAATGGGCAACATTAACAAAACATTACGATCAATCGAACGGGCAAATTAAAACACCAACTCTCACACATCCACAAACACACACACACAAACGGGCCCGGGGACAGTCACCAGGTGTGCGCTGTGTGTAGACAGCATGCACAGATGTAACTAATTATTAATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5964#0 ------------------------------------------------------------
consensus_5964#1 AGGTATTGTCTCTTCATAGCTTACAAGTTATGATGTAATTGGATCTTTTTATGGTAGTCT 60
consensus_5964#2 ---------------------------CCGCGGACGCGTGGGCAAGCTATAAGTTAATGT 33
consensus_5964#0 ------------------------------------------------------------
consensus_5964#1 TATCGGATAACAAAATCTTATCGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGT 120
consensus_5964#2 GAAAGAGAAAGAGAGCCCTAATAAGGT----CGTAAAATAAACATATACACACACA-CAC 88
consensus_5964#0 ------------------------------------------------------------
consensus_5964#1 TTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTTTATTTCACCTC 180
consensus_5964#2 ACACACCCAGACACACATACGCAAAGACA-TGTTTTGTGTATGTCTATCCGTATTAT--- 144
consensus_5964#0 -----------------------------CCGCG--GACGCGTGGGCGCTGCGAAGCGAA 29
consensus_5964#1 TATGGTCGTCCTTCTCTATCCCGTTCTCTGCATA--AGTGCCCTCCCGCTGCGAAGCGAA 238
consensus_5964#2 TACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGG 204
* * * ****
consensus_5964#0 TTCAGTGTTC-AGTTAGAAAAGAAGAAAAAAAAAAAAAACAAAAAAACGCTTTTT-AAAG 87
consensus_5964#1 TTCAGTGAAGGAGTTAGAAAAGAAGAAAAAAACAAAA------AAAACGCTTTTTTAAAG 292
consensus_5964#2 TGGGACGAAG--ATGAGGAAAGAATGCGTAAAGGATA------ATGAAATTTAACAAAAA 256
* * * ** ****** *** * * * * ** ***
consensus_5964#0 CATAAAAGTCACTAAAGAGAGGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAG 147
consensus_5964#1 CATAAAAGTCACTAAAGAGAG---GAACTAGAGGAAAAGAAGATAAACATGAAAATGAAG 349
consensus_5964#2 TTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATAT 316
* * * * * * * *** * * * ** *
consensus_5964#0 TAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAA--A 205
consensus_5964#1 TAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATNGAGGNAA--A 407
consensus_5964#2 GCGGTGTGTTGATGCATTATCGATCAAATAATA--AAACGTACTGTAGTCGATACACGTA 374
* * *** * * *** * * *** * *** * ** * *
consensus_5964#0 AGAGTAAATAAAACAGAAGTAAAGAAGAAATCGTGTGTATAGCAAGCGAACTAAAGGTGA 265
consensus_5964#1 AGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGA 467
consensus_5964#2 GGAAAGGATAAAACAATGGGGCGCCTCTTTCCGCATGC-CGCCGAGAGGTGTGGCGGTGG 433
** ******** * ** ** * ** * * ****
consensus_5964#0 TACTATTTA-GAGTGAAAGAAGACAAAACTAAGGACAAACAAAAGGAATGAAAAA--AAA 322
consensus_5964#1 TACTATTTA-GAGTGNAAGAAGACNAAACTAACAACNAACAAAAAGAATGAAAAA--AAA 524
consensus_5964#2 GATCGTCCCCGGATGTCGCGTTAATGGGC-AACATTAACAAAACATTACGATCAATCGAA 492
* * * ** * * ** * *** * ** ** **
consensus_5964#0 TGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTT 382
consensus_5964#1 TGTGCAAAAAATGGGCGGTAACAATTANGCAGTNAAATGTCACTATATATGCTTTGTTTT 584
consensus_5964#2 CGGGCAAATTA-AAACACCAACTCTCACACATCCACAAACACACACACACAAACGGGCCC 551
* ***** * * *** * * ** * * * * * *
consensus_5964#0 ATAG---GTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTT 439
consensus_5964#1 ATAG---GTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTT 641
consensus_5964#2 GGGGACAGTCACCAGGTGTGCGCTGTGTGTAGACAGCATGCACAGATGTAACTAATTATT 611
* ** * ** **** * * * * * ** * * * * **
consensus_5964#0 TGTTCTCTATGGTTGGCTTCGTGCTTGAACGCTTTAAAGCCTTGTATTGGCGAAGCAAAA 499
consensus_5964#1 TGTTC------------------------------------------------------- 646
consensus_5964#2 AATTAT------------------------------------------------------ 617
**
consensus_5964#0 ACAGAAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAAT 559
consensus_5964#1 ------------------------------------------------------------
consensus_5964#2 ------------------------------------------------------------
consensus_5964#0 AAACATATACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGGCTCCG 619
consensus_5964#1 ------------------------------------------------------------
consensus_5964#2 ------------------------------------------------------------
consensus_5964#0 TATTATTACAATCAATTATGCATTAATAATTAAACGCGCAGCATTACTAATTGAATTTAA 679
consensus_5964#1 ------------------------------------------------------------
consensus_5964#2 ------------------------------------------------------------
consensus_5964#0 AGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATT 739
consensus_5964#1 ------------------------------------------------------------
consensus_5964#2 ------------------------------------------------------------
consensus_5964#0 GAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGC 799
consensus_5964#1 ------------------------------------------------------------
consensus_5964#2 ------------------------------------------------------------
consensus_5964#0 GGTGTGGTGATGCATTATCGATCAAATAATAAAACGTACTGTA 842
consensus_5964#1 -------------------------------------------
consensus_5964#2 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||