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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence
[GGCCAGAATCNCCACGAGNGGTCGACTCAACTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTG-GCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACCATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAAGCGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGCCAACTACACCACAGCAC-CACTACCAGGTAGAACTTCCTCCTTG-TTTTGCCTAGAGCGAAGAGATGCATCCAACCATTCATCCGTCGGATTNTGCTGCTATCTCGTGTGCTGTGTGGTGTCCGAGCGTAAATACGCACATANAGGATTGACCCCTGTGTTGACTTTCAAAGGGCAAGCTGAACACAACANCACAAGCAACACGCACGCACACGGACTGCTA]
[+] EMBL BX468222 [GGCCAGAATCNCCACGAGNGGTCGACTCAACTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTG GCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACCATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAAGCGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGCCAACTACACCACAGCAC CACTACCAGGTAGAACTTCCTCCTTG TTTTGCCTAGAGCGAAGAGATGCAT ]
[+] EMBL AL693004 [ cgnggtTTGTTTGAATTAGCA CAGCATCAGCA CNGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTGTGCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACCATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAA CGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGCCAACTACACAACA CACACACTACCAGGTAGAACTTCCTCCTTGTTTTTGCCTAGAGCGAAGAGATGCATCCAACCATTCATCCGTCGGATTNTGCTGCTATCTCGTGTGCTGTGTGGTGTCCGAGCGTAAATACGCACATANAGGATTGACCCCTGTGTTGACTTTCAAAGGGCAAGCTGAACACAACANCACAAGCAACACGCACGCACACGGACTGCTA]
consensusID : consensus_5965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[AATTAATTAATGATAAGCACGCTACGAAATGATCATAGTTTCGCCCAGTTTCACCATCCAGCCTTCAAAAAAATACACACAAACACACACACACATTAACACAAACACAATCACACTTAAGAAATGAAGAGAAAAAAACGAAACCAAACTAATTGCAAAACTGAACGAACGTGGTTGACGCACATTAAAAACCGTTTCAATTCCCCCAAAAAAAGAAACCAACCGCAGCGTCGCTTACCGATGAGCGCGCCATGCACTTAAAAGCTATAAAGCCACCATGCACAGAGTGCAACACGCTGGCAAAGATGGTATCAGAATCGTATTGTACGTATTGTGGGTACAAGCCAAAAACATGAATCCAAGAAAAGGGCTAGACAAACCGTCGCTCGTCTGGCAGGCCAGGCTTCTGCCATGATCTTGCCGAGAGAATGCAAAAAGAAAGCTAGGGAAGAACAACACATCATCTGGCAGCACAGTTCGAGCCGAATGAAGATCGGAACGATGGAAGAAAAAAGGTGAACGAAAACCATAAATTACAACAACATCCAGTGATGTACGAGGCTAGAACGGAGAAACCATGCAAAAGCAAACGAACAACAACTTACAAAGTGGTACTATACATGTAATTATATACTTACGAAACAAGCAAAAGGAAAATGAGAATCGCAACAGCGCGATATGCGAGCAGGAACAACTA]
[+] EMBL BX618258 [AATTAATTAATGATAAGCACGCTACGAAATGATCATAGTTTCGCCCAGTTTCACCATCCAGCCTTCAAAAAAATACACACAAACACACACACACATTAACACAAACACAATCACACTTAAGAAATGAAGAGAAAAAAACGAAACCAAACTAATTGCAAAACTGAACGAACGTGGTTGACGCACATTAAAAACCGTTTCAATTCCCCCAAAAAAAGAAACCAACCGCAGCGTCGCTTACCGATGAGCGCGCCATGCACTTAAAAGCTATAAAGCCACCATGCACAGAGTGCAACACGCTGGCAAAGATGGTATCAGAATCGTATTGTACGTATTGTGGGTACAAGCCAAAAACATGAATCCAAGAAAAGGGCTAGACAAACCGTCGCTCGTCTGGCAGGCCAGGCTTCTGCCATGATCTTGCCGAGAGAATGCAAAAAGAAAGCTAGGGAAGAACAACACATCATCTGGCAGCACAGTTCGAGCCGAATGAAGATCGGAACGATGGAAGAAAAAAGGTGAACGAAAACCATAAATTACAACAACATCCAGTGATGTACGAGGCTAGAACGGAGAAACCATGCAAAAGCAAACGAACAACAACTTACAAAGTGGTACTATACATGTAATTATATACTTACGAAACAAGCAAAAGGAAAATGAGAATCGCAACAGCGCGATATGCGAGCAGGAACAACTA]
consensusID : consensus_5965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CAGAATCGCCNGAGGTTTAAACAGTGCGGACGTACATTACACATCGGTCGACTCANCTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAACGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGGGCAACTACACACAACAACATAACAGGTAGAACTTCCTCCTTGTATTTGCCTAGAGCGAACGAGATGCATCCAAACATTCATCCGTCGGTTTTGCTGCTATTTCNTGTGTGCTCGTGTTAGTGTCCGAGCGTAATACGCACATAAGAGGATGACCTGTGTGAC]
[+] EMBL AL929789 [CAGAATCGCCNGAGGTTTAAACAGTGCGGACGTACATTACACATCGGTCGACTCANCTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAACGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGGGCAACTACACACAACAACATAACAGGTAGAACTTCCTCCTTGTATTTGCCTAGAGCGAACGAGATGCATCCAAACATTCATCCGTCGGTTTTGCTGCTATTTCNTGTGTGCTCGTGTTAGTGTCCGAGCGTAATACGCACATAAGAGGATGACCTGTGTGAC]
consensusID : consensus_5965#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[CGATGCGAAGGCAATTAATTCCGTCGGTCGCACCGCCGCCCAGATGGGTGCATTCGTGGCGAACCACGAGGCGGTCGGTACGATCAACAACTTCGTCCCGCTGAAGGACGTGGAGTGCTACACGGTTGCACGGGGCCAAAAGGAGGCGCTGCTGCCGGTGGTGCTGCTGGAGCCATTCCATAGCTTTATCATGCAGGTCAATATCCACCCGGTGCGGATACTGCTGAACCTGCAGCGGTACAAAATGCTGGCCTCGGACATGAAGAACCTGCGAGCGGTGCTGGTGGAGATGATGGAGCGCGAAAAGAAGCGGCGCGGTAAAAAAAAAAAAAAAA]
[+] EMBL CNS08ZDE [CGATGCGAAGGCAATTAATTCCGTCGGTCGCACCGCCGCCCAGATGGGTGCATTCGTGGCGAACCACGAGGCGGTCGGTACGATCAACAACTTCGTCCCGCTGAAGGACGTGGAGTGCTACACGGTTGCACGGGGCCAAAAGGAGGCGCTGCTGCCGGTGGTGCTGCTGGAGCCATTCCATAGCTTTATCATGCAGGTCAATATCCACCCGGTGCGGATACTGCTGAACCTGCAGCGGTACAAAATGCTGGCCTCGGACATGAAGAACCTGCGAGCGGTGCTGGTGGAGATGATGGAGCGCGAAAAGAAGCGGCGCGGTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5965#0 ---------------------------GGCCAGAATCNCCACGAGNGGTCGACTCAACTT 33
consensus_5965#2 CAGAATCGCCNGAGGTTTAAACAGTGCGGACGTACATTACAC-ATCGGTCGACTCANCTT 59
consensus_5965#3 ------------------------------------------------------------
consensus_5965#1 -------------AATTAATTAATGATAAGCACGCTACGAAATGATCATAGTTTCGCCCA 47
consensus_5965#0 TTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGG 93
consensus_5965#2 TTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGG 119
consensus_5965#3 -------------------------------------------------CGATGCGAAGG 11
consensus_5965#1 GTTTCACCATCCAGCCTTCAAAAAAATACACACAAACACACACACACATTAACACAAACA 107
* **
consensus_5965#0 AGTTAA-ATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAA 152
consensus_5965#2 AGTTAA-ATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAA 178
consensus_5965#3 CAATTA-ATTCCGTCGGTCGCA--CCGCCGCCCAGATGGGTGCATTCGTGGCGAAC-CAC 67
consensus_5965#1 CAATCACACTTAAGAAATGAAGAGAAAAAAACGAAACCAAACTAATTGCAA-AACTGAAC 166
* * * * * * * * * *
consensus_5965#0 AATGTCGGACGATT-ACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGC 211
consensus_5965#2 AATGTCGGACGATT-ACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGC 237
consensus_5965#3 GA-GGCGGTCGGT--ACGATCA--ACAACTTCGTCCCGCTGAAGGACGTGGAGT-GCTAC 121
consensus_5965#1 GAACGTGGTTGACGCACATTAAAAACCGTTTCAATTCCCCCAAAAAAAGAAACCAACCGC 226
* ** * ** * ** ** ** * * *
consensus_5965#0 ACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCA----AGCGACCACACCAACCATTAC-GA 266
consensus_5965#2 ACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCA----AGCGACCACACCAAC-ATTAC-GA 291
consensus_5965#3 ACGGTTGCACGGGGCCAAAAGGAGGCGCTGCT----GCCGGTGGTGCTG-CTGGAGC-CA 175
consensus_5965#1 AGCGTCGCTTACCGATGAGCGCGCCATGCACTTAAAAGCTATAAAGCCACCATGCACAGA 286
* ** ** * * * * * * * *
consensus_5965#0 TCCGAGCGGCCATTCGCGCAAGAT-TGTGACCAAGCTGAAAAACACGGAAT---CGAACA 322
consensus_5965#2 TCCGAGCGGCCATTCGCGCAAGAT-TGTGACCAAGCTGAAAAACACGGAAT---CGAACA 347
consensus_5965#3 TTCCATAGCTTTATCATGCA-GGT-CAATATCCACCCGGTGCGGATACTGC---TGAACC 230
consensus_5965#1 GTGCAACACGCTGGCAAAGATGGTATCAGAATCGTATTGTACGTATTGTGGGTACAAGCC 346
* * * * * * * * *
consensus_5965#0 AGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGA-GTGACTTCCGTGCGAATGTGGTGT 381
consensus_5965#2 AGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGA-GTGACTTCCGTGCGAATGTGGTGT 406
consensus_5965#3 TGCAG-------CGGTACAAAATGCTGGCCTCGGACATGAAGAACCTGCGA--GCGGTGC 281
consensus_5965#1 AAAAACATGAATCCAAGAAAAGGGCTAGACAAACCGTCGCTCGTCTGGCAGGCCAGGCTT 406
* * ** * * * * * ** **
consensus_5965#0 GTGTGTGAGTGA-GTGGTTCTAATCCGGCCAGCGCGCCATGCGAAGCGAAAAACGAGATC 440
consensus_5965#2 GTGTGTGAGTGA-GTGGTTCTAATCCGGCCAGCGCGCCATGCGAA-CGAAAAACGAGATC 464
consensus_5965#3 TGGTGGAGATGATGGAGCGCGAAAAGAAGCGGCGCGGTAAAAAAAAAAAAAAAA------ 335
consensus_5965#1 CTGCCATGATCTTGCCGAGAGAATGCAAAAAGAAAGCTAGGGAAG-AACAACACATCATC 465
* * * * ** * * * * ** *
consensus_5965#0 TCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGC-CAACTACACCAC 499
consensus_5965#2 TCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGGGCAACTACAC-AC 523
consensus_5965#3 ------------------------------------------------------------
consensus_5965#1 TGGCAGCACAGTTCGAGCCGAATGAAGATCGGAACGATGGAAGAAAAAAGGTGAACGAAA 525
consensus_5965#0 AGCACCACTACCAGGTAGAACTTCCTCCTTGT-TTTGCCTAGAGCGAA-GAGATGCATCC 557
consensus_5965#2 AACAACA-TAACAGGTAGAACTTCCTCCTTGTATTTGCCTAGAGCGAACGAGATGCATCC 582
consensus_5965#3 ------------------------------------------------------------
consensus_5965#1 ACCATAAATTACAACAACA--TCCAGTGATGTACGAGGCTAGAACGGAGAAACCATGCAA 583
consensus_5965#0 AACCATTCATCCGTCGGATTNTGCTGCTATCTCGTGTGC---TGTGT-GGTGTCCGAGCG 613
consensus_5965#2 AAACATTCATCCGTCGG-TTTTGCTGCTATTTCNTGTGTGCTCGTGTTAGTGTCCGAGCG 641
consensus_5965#3 ------------------------------------------------------------
consensus_5965#1 AAGCAAACGAACAACAACTTACAAAGTGGTACTATACATGTAATTATATACTTACGAAAC 643
consensus_5965#0 TAAATACGCACATANAGGATTGACCCCTGTGTTGACTTTCAAAGGGCAAGCTGAACACAA 673
consensus_5965#2 TAA-TACGCACATAAGAGGATGACCTGTGTGAC--------------------------- 673
consensus_5965#3 ------------------------------------------------------------
consensus_5965#1 AAGCAAAAGGAAAATGAGAATCGCAACAGCGCGATATGCGAGCAGGAACAACTA------ 697
consensus_5965#0 CANCACAAGCAACACGCACGCACACGGACTGCTA 707
consensus_5965#2 ----------------------------------
consensus_5965#3 ----------------------------------
consensus_5965#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||