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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence
[CCGGCGACCCGGAGCAGTGCGGCGTCCCTTAGCAAGGCGCTGTACGATCGCGACGATTCGTCCAGTGGCGGCGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGAGGAGGAGGTGGAGGCGGACCGCGCGGTCCGGCACTGCAGTACAATGGGCCCGATTTGGAGGACGTGAGGGAAAGCGTCCGGCAGGGCGTTACGAAGGTGGCCGGACGTCTCAGTTCCCTCGCCAGCGATGTGATGAACTCGATTCAGGATAAATATGGCTACTGAAGCGCGCGCGCGTGTGTACAGCAGCATCCCGAATGCTGTGGAAGCCGTGCACGGACGTGTCACCTCCTCCAGCATGGATCACAATCACAACA]
[+] EMBL BM576243 [CCGGCGACCCGGAGCAGTGCGGCGTCCCTTAGCAAGGCGCTGTACGATCGCGACGATTCGTCCAGTGGCGGCGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGC ]
[+] EMBL BX615029 [ GCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGAGGAGGAGGTGGAGGCGGACCGCGCGGTCCGGCACTGCAGTACAATGGGCCCGATTTGGAGGACGTGAGGGAAAGCGTCCGGCAGGGCGTTACGAAGGTGGCCGGACGTCTCAGTTCCCTCGCCAGCGATGTGATGAACTCGATTCAGGATAAATATGGCTACTGAAGCGCGCGCGCGTGTGTACAGCAGCATCCCGAATGCTGTGGAAGCCGTGCACGGACGTGTCACCTCCTCCAGCATGGATCACAATCACAACA]
consensusID : consensus_5969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGTAGGTTATCGGCGCCTCGGGTGGATTCGGGCGGGGGGCGATGGAGCTTTTCGTTTGCAATAATGCCATTCCATTCCTTTTCTTGTCCCAAGAAGAGGAGGTGGAGGCGGACC]
[+] EMBL BM640934 [CCGGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGTAGGTTATCGGCGCCTCGGGTGGATTCGGGCGGGGGGCGATGGAGCTTTTCGTTTGCAATAATGCCATTCCATTCCTTTTCTTGTCCCAAGAAGAGGAGGTGGAGGCGGACC]
consensusID : consensus_5969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[ACCCACGCGTCCGCTGGAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGGGGGGACTAATTGCTCCCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGTGAATGTGTTCCCGGGGCGTAGCCACTGGATGATGATCAGTAGCATCCTGGAGGAGCTACTCGATCGGGGCCATGAGGTGACCGTAATCACCAACTATCCGAGGAAAAGTGCACACCCAAACCTTACCGAGATTGTGATCTCCCCGATCTACGACTTTTGGGGCAAATCGGTTAAGGTGGACTCGCTGTACGATCTTACCGACATCTCGGTGCACCAGATGCTGATGGACTTTCTGTATCCGCTGGGCCTTCAAACGGCCGAGTATGCGTTCACTCGG]
[+] EMBL BM581141 [ACCCACGCGTCCGCTGGAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGGGGGGACTAATTGCTCCCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGTGAATGTGTTCCCGGGGCGTAGCCACTGGATGATGATCAGTAGCATCCTGGAGGAGCTACTCGATCGGGGCCATGAGGTGACCGTAATCACCAACTATCCGAGGAAAAGTGCACACCCAAACCTTACCGAGATTGTGATCTCCCCGATCTACGACTTTTGGGGCAAATCGGTTAAGGTGGACTCGCTGTACGATCTTACCGACATCTCGGTGCACCAGATGCTGATGGACTTTCTGTATCCGCTGGGCCTTCAAACGGCCGAGTATGCGTTCACTCGG]
consensusID : consensus_5969#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[ATCGCACGAGGTNNANAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGAGGGTACTAATTGCTCGCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGATTTTTTCGATGACTATTCCAGTAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATAGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGGCCAGGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAAACCCANCATAGCAGG]
[+] EMBL BX469656 [ATCGCACGAGGTNNANAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGAGGGTACTAATTGCTCGCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGATTTTTTCGATGACTATTCCAGTAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATAGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGGCCAGGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAAACCCANCATAGCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5969#0 --------------------------------------------------CCGGCGACCC 10
consensus_5969#1 ------------------------------------------------------------
consensus_5969#3 ATCGCACGAGGTNNANAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCT 60
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 GGAGCAGTGCGGCGTCCCTTAGCAAGGCGCTGTACGATCGCGACGATTCGTCCAGTGGCG 70
consensus_5969#1 ------------------------------------------------------------
consensus_5969#3 GTCTGTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGAGGGTACTAATTGCTC--GCTAAA 118
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 GCGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGAAGTGGAAGTGGCGGCGGCGGCAGTG 130
consensus_5969#1 -----------------------------CCGGGAAGTGGAAGTGGCGGCGGCGGCAGTG 31
consensus_5969#3 ATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGA 178
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 GTGGGAA-------CGATTTTTTCGATGACTATTCCA-TAATCTACGGGTTTTCGGGCAG 182
consensus_5969#1 GTGGGAA-------CGATTTTTTCGATGACTATTCCA-TAATCTACGGGTTTTCGGGCAG 83
consensus_5969#3 GCACGGATCCTTTCCGATTTTTTCGATGACTATTCCAGTAATCTACGGGTTTTCGGGCAG 238
consensus_5969#2 ----------------------------------------ACCCACGCGTCCGCTGG-AG 19
* * *** ** * ** **
consensus_5969#0 TGGCAAGGGGGCGGATATGAGCGAAGCGACACA-GATGGGGTTCGATACGCTCGAGCCGA 241
consensus_5969#1 TGGCAAGGGGGCGGATATGAGCGAAGCGACACA-GATGGGGTTCGATACGCTCGAGCCGA 142
consensus_5969#3 TGGCAAGGGGGCGGATATGAGCGAAGCGACACA-GATAGGGTTCGATACGCTCGAGCCGA 297
consensus_5969#2 TCACATCG-------TATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTAAA 72
* ** * *** *** * * ** * * *** * * * *
consensus_5969#0 TCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCC--AGCAGGCGGTAGCTTGAA 299
consensus_5969#1 TCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCC--AGCAGGCGGTAGCTTGAA 200
consensus_5969#3 TCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGGCCAGGCAGGCGGTAGCTTGAA 357
consensus_5969#2 GGTTCGTTCCGCGTCTGGAAGTGGGGGGACTAATTGCTCCCTAAAATGCATCTTCTCC-- 130
* ***** *** * * * * * * ** **
consensus_5969#0 GGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGC-CGCGGAGGTGGCAGTAGCA 358
consensus_5969#1 GGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGC-CGCGGAGGTGGCAGTAGCA 259
consensus_5969#3 GGGTGGATCGAGCAGTATTAGCGATCAAACCCANCATAGC-AGG---------------- 400
consensus_5969#2 CGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTT 190
* *** * ** ** * * * * *
consensus_5969#0 GCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACA 418
consensus_5969#1 GCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACA 319
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 CCGTGAATGTGTTCCCGGGGCGTAGCCACTGGATGATGATCAGTAGCATCCTGGAGGAGC 250
consensus_5969#0 GTAGCAGTCGAAGGAACG-GTCAACCGCAACCAGTCGATAGC--AGTGACGTTGCGCAGA 475
consensus_5969#1 GTAGCAGTCGAAGGAACG-GTCAACCGCAACCAGTCGATAGC--AGTGACGTTGCGCAGA 376
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 TACTCGATCGGGGCCATGAGGTGACCGTAATCACCAACTATCCGAGGAAAAGTGCACACC 310
consensus_5969#0 AAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGA 535
consensus_5969#1 AAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGA 436
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 CAAACCTTACCGAGATTGTGATCTCCCCGATCTACGACTTTTGGGGCAA--ATCGGTTAA 368
consensus_5969#0 GCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCG 595
consensus_5969#1 GCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCG 496
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 GGTG-GACTCGCTGTACGATCTTACCGACATCTCGG--TGCACCAGATGCTGATGGACTT 425
consensus_5969#0 ACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGAGGAGGAG 655
consensus_5969#1 ACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGTAG----G 552
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 TCTGTATCCGCTGGGCCTTCAAACGGCCGAGTATGCGTTCACTCGG-------------- 471
consensus_5969#0 GTGGAGGCGGACCGCGCGGTCCGGCACTGCAGTACAATGGGCCCGATTTGGAGGACGTGA 715
consensus_5969#1 TTATCGGCGCCTCGGGTGGATTCGGGC-GGGGGGCGATGGAGCTTTTCGTTTGCAATAAT 611
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 GGGAAAGCGTCCGGCAGGGCGTTACGAAGGTGGCCGGACGTCTCAGTTCCCTCGCCAGCG 775
consensus_5969#1 GCCATTCCATTCCTTTTCTTGTCCCAAGAAGAGGAGGTGGAGGCGGACC----------- 660
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 ATGTGATGAACTCGATTCAGGATAAATATGGCTACTGAAGCGCGCGCGCGTGTGTACAGC 835
consensus_5969#1 ------------------------------------------------------------
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 AGCATCCCGAATGCTGTGGAAGCCGTGCACGGACGTGTCACCTCCTCCAGCATGGATCAC 895
consensus_5969#1 ------------------------------------------------------------
consensus_5969#3 ------------------------------------------------------------
consensus_5969#2 ------------------------------------------------------------
consensus_5969#0 AATCACAACA 905
consensus_5969#1 ----------
consensus_5969#3 ----------
consensus_5969#2 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||