cluster # 5973

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Anopheles gambiae
cluster # 5973 cluster # 5973 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5973#0 length = 893 sequences # 4

consensus_5973#1 length = 308 sequences # 1

consensusID : consensus_5973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 893
fasta sequence

                              [CTGTTGGCCTACTGGTCATTTGAGCGGAAGGGGAGCACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAG-AGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCC-TTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT-CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC-GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAGAGAGATAAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG]

[-] EMBL CNS09K88             [CTGTTGGCCTACTGGTCATTTGAGCGGAAGGGGAGCACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCT GATTCAACAGAGGGGAAAG AGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCC TTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAAT                                                          ]
[+] EMBL CNS09LAD             [                                 AGCACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAGCAGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCCTTTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTTACATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGCGGGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGCTTTGTTTGTAAGAAGTAA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS09K87             [                                   CACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAG AGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCC TTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAGAGAGATAAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG]
[-] EMBL CNS09LAE             [                                                                                                                                                                                                                                                                                                                                       ACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGCTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGGGGAAGAGAAGTAAACGAACACGAGAAAAGTTATTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATTTTTGCTGCTTGCGACAAAGTGTGT                                                                                                                             ]




>consensus_5973#0
CTGTTGGCCTACTGGTCATTTGAGCGGAAGGGGAGCACCGGACAGCAGGCGAAGTTACGC
GGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGT
ACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAGAG
AATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATT
TCATCGTGCTCTGTATCGTTTATTTTTTAACTCCCTTTTTTGTCCTACCTTTTGGAAAAT
GATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTT
GTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGT
AACGTTCTTTTCATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCT
GCGGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTA
AGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCAC
TAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCT
TCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCA
CGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAG
AGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAG
AGAGATAAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG

consensusID : consensus_5973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCGGGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAGTTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGATTTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCAGGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGTGCCTCTGT]

[+] EMBL BX619798             [CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCGGGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAGTTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGATTTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCAGGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGTGCCTCTGT]




>consensus_5973#1
CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCG
GGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAG
TTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGAT
TTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCA
GGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGT
GCCTCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5973#0      -------------------------------CTGTTGGCCTA---CTGGTCATTTGAGCG 26
consensus_5973#1      CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCG 60
                                                     *      * **    *  ***********

consensus_5973#0      GAA--GGGGAGCACCGG-ACAGCAGGCG-AAGTTACGCGGCGTGCGAA--CCACCGG-AG 79
consensus_5973#1      GGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAG 120
                      * *  ************ ********** ***************** *  ******* **

consensus_5973#0      TTGTGACGTGAAGAGGAGA---ACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATT 136
consensus_5973#1      TTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGAT 180
                      *********  **  * **   ***********************************  *

consensus_5973#0      T--GATTTGATTTTTTTTTTCGCTGGA-TTCAACAGAGGGGAAA---GAGAATGGAGCCA 190
consensus_5973#1      TTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCA 240
                      *  ***********************  ********  ***  *    ************

consensus_5973#0      GGAA--GAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTC-AAATTTCATCGT 247
consensus_5973#1      GGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGT 300
                      ** *  ****************************************  ************

consensus_5973#0      GC-TCTGTATCGTTTATTTTTTAACTCCCTTTTTTGTCCTACCTTTTGGAAAATGATTCC 306
consensus_5973#1      GCCTCTGT---------------------------------------------------- 308
                      ** *****                                                    

consensus_5973#0      GCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTT 366
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTT 426
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      CTTTTCATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGCGGCT 486
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      CACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGT 546
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAG 606
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      CGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAA 666
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAA 726
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTA 786
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAGAGAGAT 846
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG 893
consensus_5973#1      -----------------------------------------------